PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00005941-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family B3
Protein Properties Length: 831aa    MW: 92109.1 Da    PI: 6.6082
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00005941-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.32.9e-18305403197
                            EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                            f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d++g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++
  SMil_00005941-RA_Salv 305 FEKMLSASDAGRIGRLVLPKKCAEAYfpTINHPEGLPLKVQDLKGKEWVFQFRFwpNNNSRMYVLE-GITPCIQSMQLQAGDVVTFSR 391
                            89**************************666777788***************9989999999***9.********************6 PP

                            -SSSEE..EEEEE CS
                     B3  85 dgrsefelvvkvf 97 
                             +  e++l ++ +
  SMil_00005941-RA_Salv 392 LE-PEGKLIMGGR 403
                            65.6776776665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.02E-19302398IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-28302405IPR015300DNA-binding pseudobarrel domain
CDDcd100173.27E-21303404No hitNo description
SMARTSM010197.5E-19305406IPR003340B3 DNA binding domain
PfamPF023622.1E-15305402IPR003340B3 DNA binding domain
PROSITE profilePS5086310.955305406IPR003340B3 DNA binding domain
PROSITE profilePS5105013.603533583IPR011124Zinc finger, CW-type
PfamPF074965.0E-11538580IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 831 aa     Download sequence    Send to blast
LLGFVCVMSS TTEVCFNSNC KDTSEKWRRG WRRRTGEYAH LCDRCASAYE DGKFCETFHM  60
NASGWRCCES CGKTPNPAWP PPLHFLPSQP ERMKDLSMKT WNAIAGSGPV PWRQAPSLFN  120
GSSIQANDQL KVPFEVDVSG GIDRYGLCER LSMASPEIKQ ERSYERLANG KLRLGLPETL  180
QNGNIGLNVK EQHCPFTSDF KPIYPRNDTS SNLSLGIASS SKNEIDDAPV SAILSQLPSV  240
PISLGKQVCS QSGMDSSGEG QIRNGKSRGD GRSRNQLLPR YRPQITDEEL QQISGDSKSV  300
ITPLFEKMLS ASDAGRIGRL VLPKKCAEAY FPTINHPEGL PLKVQDLKGK EWVFQFRFWP  360
NNNSRMYVLE GITPCIQSMQ LQAGDVVTFS RLEPEGKLIM GGRKASAVPS LDQGEEVNVI  420
GSEASSPGDA SARSKCTDVI SVNGHMKEKI LEDKPVMHVK RKNSNLNAKS KRLRIENEDM  480
MELKLTYKEA QRLIRAPAKI VPSSFVVDGC EFEEFEETEP VIGRPTLLGI DHSGEKIQWV  540
QCEDCFKWRK VPANALVPSK WTCSDNGWDL HRSMCSSAEE LTNEQLEEML PAMNRGPCNK  600
EESSGWDADL CVAVEGLDTL ANLAIEGEGE GLVGSSENRT KHPRHRRGCT CIVCLQPPSG  660
KGIKHRQSCE CVVCTSLKRR FRTLMERREK KQVDKETEPP QSSSENLQGQ LLLEKEQDVD  720
ACVGSDTANR SLNEEEAPNS GHLGEPNARK LSSSPLKGQI DLNIQPEREE DFSPRSDCGA  780
VKCSLPGSAD RFFRQQHRSF DSDAMENLLG KQDGVGCVNI ISCVALDKKS G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C2e-612834061124B3 domain-containing transcription repressor VAL1
5yzz_C2e-612834061124B3 domain-containing transcription repressor VAL1
5z00_C2e-612834061124B3 domain-containing transcription repressor VAL1
5z00_G2e-612834061124B3 domain-containing transcription repressor VAL1
5z00_K2e-612834061124B3 domain-containing transcription repressor VAL1
5z00_M2e-612834061124B3 domain-containing transcription repressor VAL1
6j9a_A2e-612834062125B3 domain-containing transcription repressor VAL1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096215.10.0B3 domain-containing protein Os07g0563300
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A4D8YYR60.0A0A4D8YYR6_SALSN; Uncharacterized protein
STRINGMigut.M01204.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA71282126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-132HSI2-like 1