PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00005873-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 222aa    MW: 24880.6 Da    PI: 12.2038
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00005873-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.8e-194392255
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                            y+GVr+++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++aa+ +++g
  SMil_00005873-RA_Salv 43 TYRGVRRRS-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDAAAVAIKG 92
                           69****887.**********843...6**********************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-124391IPR001471AP2/ERF domain
PROSITE profilePS5103223.70943100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-3243102IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-2243101IPR016177DNA-binding domain
SMARTSM003804.2E-3843106IPR001471AP2/ERF domain
CDDcd000181.08E-2244102No hitNo description
PRINTSPR003675.7E-114455IPR001471AP2/ERF domain
PRINTSPR003675.7E-116682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MDPHQQLIIF HYMHQSTPAS SDHTSTQAAI KKLSTAETNN HPTYRGVRRR SWGKWVSEIR  60
EPRKKSRIWL GTFATAEMAA RAHDAAAVAI KGRSAVLNFP EQAEKLPRAA SKSPKDVQAA  120
AAKAAELVVS TAEHGGQLSS PVSSSSSSSS LLQLRMMHLL VYRICSWVST ATTVLIRGSA  180
QRRRRRRRRR RGWRRPVVRL VMLNLSRGTS LEFLCSINQT RT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-20411021274Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180186QRRRRRR
2181195RRRRRRRRRRGWRRP
3182190RRRRRRRRR
4183190RRRRRRRR
5184190RRRRRRR
6185193RRRRRRGWR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081306.28e-52ethylene-responsive transcription factor ERF039-like
TrEMBLA0A371HXZ58e-46A0A371HXZ5_MUCPR; Ethylene-responsive transcription factor ERF034 (Fragment)
STRINGXP_010677077.11e-42(Beta vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.11e-29ERF family protein