PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00005840-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HD-ZIP
Protein Properties Length: 646aa    MW: 72719.7 Da    PI: 7.5949
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00005840-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.88.8e-191974156
                           TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                           +r+ +++++eq++ Le++F+++++p++++r +L+++lgL+++q+k+WFqN+R ++k
  SMil_00005840-RA_Salv 19 KRQYHRHSTEQVHHLEAFFKEHPHPDENQRVQLSRELGLDTKQIKFWFQNKRSQKK 74
                           688999**********************************************9988 PP
2START131.87.6e-421884013206
                            HHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S CS
                  START   3 aeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla 77 
                            a +a++el+ +  +++p+W +ss         + +d+   k+    +       ++e +++sg v m++++l+e +ld   +W+ +++
  SMil_00005840-RA_Salv 188 ASAAMDELLELLRVQDPLWISSSndgrwtlHRDSYDKLFPKP----NhfksaaARMESSKESGEVAMPPPRLLEAFLDPE-KWKDMFP 270
                            7899*******************7776444444444444444....14577999****************9999999998.******* PP

                            ....EEEEEEEECTT....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEE CS
                  START  78 ....kaetlevissg....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliep 156
                                ka t++v++ g    g l+lm+ ++  lsplv+ R+f  +Ry+rq +  +w+ vdvS d    p+      R+ +lpSg++ie+
  SMil_00005840-RA_Salv 271 civtKARTIQVVEAGmsfnGSLHLMYEKTHILSPLVApREFFLIRYCRQISTSRWAMVDVSYDA--GPS------RSWKLPSGCIIED 350
                            ************************************99*********************77764..444......788********** PP

                            ECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                  START 157 ksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                            ksng+s vtwvehv ++++++ h l+r lv  ++a gak+w atlqr ce+
  SMil_00005840-RA_Salv 351 KSNGKSFVTWVEHVQVDDKSVtHRLYRDLVCGSHAYGAKRWIATLQRMCER 401
                            *************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-21570IPR009057Homeodomain-like
SuperFamilySSF466891.67E-181180IPR009057Homeodomain-like
PROSITE profilePS5007117.2651676IPR001356Homeobox domain
SMARTSM003896.4E-171880IPR001356Homeobox domain
PfamPF000463.8E-161974IPR001356Homeobox domain
CDDcd000862.04E-161977No hitNo description
PROSITE patternPS0002705174IPR017970Homeobox, conserved site
PROSITE profilePS5084836.389177404IPR002913START domain
SuperFamilySSF559618.49E-30179401No hitNo description
CDDcd088752.12E-92184400No hitNo description
Gene3DG3DSA:3.30.530.202.7E-5186364IPR023393START-like domain
SMARTSM002341.4E-28186401IPR002913START domain
PfamPF018523.0E-35188401IPR002913START domain
SuperFamilySSF559614.84E-12421628No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MEAANGSGDE GSGDSRKGKR QYHRHSTEQV HHLEAFFKEH PHPDENQRVQ LSRELGLDTK  60
QIKFWFQNKR SQKKAQNERT DNNALRAQNE RIRCENEAMR EALKNIVCPS CRDQDKLHAL  120
LRLKSENIRL REQATHAYLH ERTMNGTTKS SGNRVIRSSS LEENPTAEFC MSTGMTQEAD  180
RGAIMETASA AMDELLELLR VQDPLWISSS NDGRWTLHRD SYDKLFPKPN HFKSAAARME  240
SSKESGEVAM PPPRLLEAFL DPEKWKDMFP CIVTKARTIQ VVEAGMSFNG SLHLMYEKTH  300
ILSPLVAPRE FFLIRYCRQI STSRWAMVDV SYDAGPSRSW KLPSGCIIED KSNGKSFVTW  360
VEHVQVDDKS VTHRLYRDLV CGSHAYGAKR WIATLQRMCE RATFALRPPA SQLEGVIESA  420
EGRRNVMKLS ERMVRSFCEV LNMSDRLDFP HLSELYNSGV RVSLRKSHGL GQPQGLIVSA  480
ATSLWLPFRL AHLFNFFTDE NKRPQWDILS SGNPVSSIAR ISTGPNSGNC ISIIQPFVPK  540
ENMLMLQESS MDSVGASIIY APVELAAVSA VVEGEDVMKI EILPSGYVMS GDGRMEGSLL  600
TVAFQMLVCS NSVSKQLNMD SVATLHSLIS STVHNIKLAL DCPDLD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012845087.10.0PREDICTED: homeobox-leucine zipper protein ROC8-like isoform X1
TrEMBLA0A4D8Z3C40.0A0A4D8Z3C4_SALSN; Homeobox-leucine zipper protein
STRINGMigut.H02245.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10211732
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03260.11e-176homeodomain GLABROUS 8