PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00005835-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | LBD | ||||||||
Protein Properties | Length: 215aa MW: 22647.7 Da PI: 7.0082 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 28.5 | 4.4e-09 | 60 | 99 | 56 | 95 |
DUF260 56 damsslvyeAearardPvyGavgvilklqqqleqlkaela 95 ++++sl+yeA+ r+ +Pv+G+vg+++++ + +++++e++ SMil_00005835-RA_Salv 60 KIFRSLLYEACGRIINPVHGSVGLMSSGDWPRCHAAVEAV 99 689***************************9999998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 3.7E-5 | 60 | 97 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MAAEFSAKAA AKIAVSNLVS SGLTHPNLKP TPPCFSPNST AAPASSTSSP PPLLIAAPVK 60 IFRSLLYEAC GRIINPVHGS VGLMSSGDWP RCHAAVEAVL GGVHLVSPCD IRHAPKGRDR 120 RKRSTSSAAA ESEAKFTITG WDHNKDLLVI DEKSGRAPSH DSFSAETVEP SLVSFDDQGT 180 IPEPRLSEVG LELSLGLNPV LHTYLSAVIH ISDSQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011070804.1 | 1e-51 | LOB domain-containing protein 40-like | ||||
Swissprot | Q9CA30 | 1e-17 | LBD42_ARATH; LOB domain-containing protein 42 | ||||
TrEMBL | A0A4D9BQG8 | 3e-68 | A0A4D9BQG8_SALSN; Uncharacterized protein | ||||
STRING | Migut.E00341.1.p | 2e-38 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68510.1 | 2e-17 | LOB domain-containing protein 42 |