PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00005802-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family GATA
Protein Properties Length: 315aa    MW: 34135.7 Da    PI: 6.2341
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00005802-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.14.3e-17216250135
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  SMil_00005802-RA_Salv 216 CLHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 250
                            99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.3E-757298IPR016679Transcription factor, GATA, plant
SMARTSM004011.6E-15210260IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.242210246IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.61E-14212273No hitNo description
Gene3DG3DSA:3.30.50.101.5E-13212247IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.43E-13215262No hitNo description
PfamPF003206.4E-15216250IPR000679Zinc finger, GATA-type
PROSITE patternPS003440216241IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEYFAADYAE FSSVDNGNLN GNNNNNGAHF TVDDLLDFSK EDETMTDVFF ESLPGNSGDS  60
STVTAVDSCN SSVSGGGDGQ FNGNISCRSY NEPQFSGNEL CVPYDDLAEL EWLSNFVEES  120
FSTDDLRFIP TTNAAASAAA KTVSADTSSS VITAHSPPSS VFPSDVSVPG KARSKRSRAP  180
PCDWSSRLLL VAAPSPAPKM AASSKREAGE APGRKCLHCA SEKTPQWRTG PLGPKTLCNA  240
CGVRYKSGRL VPEYRPAASP TFISARHSNS HRKVLELRRQ KDVQRQQIMS HASVFNGCDE  300
FLIHHRNGPD MRHMI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3580344e-33AK358034.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1067G03.
GenBankAK3658414e-33AK365841.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2038D02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012856815.11e-160PREDICTED: GATA transcription factor 12-like
SwissprotO826321e-71GATA9_ARATH; GATA transcription factor 9
TrEMBLA0A4D8YRS50.0A0A4D8YRS5_SALSN; Uncharacterized protein
STRINGMigut.I00908.1.p1e-160(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19192363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.17e-65GATA transcription factor 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]