PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00005799-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 254aa    MW: 28732.3 Da    PI: 8.5851
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00005799-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.74.7e-12555146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                           ++rWT+eE+  l+ +++++G g W+tI +          R+  ++k++w++
  SMil_00005799-RA_Salv  5 KQRWTPEEEAALKAGINKYGVGKWSTILKDPEfktilRSRSNVDLKDKWRN 55
                           79************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.194163IPR017930Myb domain
SuperFamilySSF466893.23E-16258IPR009057Homeodomain-like
SMARTSM007179.2E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-14556IPR009057Homeodomain-like
PfamPF002492.6E-8556IPR001005SANT/Myb domain
CDDcd116603.90E-22657No hitNo description
SMARTSM005263.1E-9123184IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150416.82125198IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.102.1E-14126189IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.74E-12127195IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd000738.63E-11129184No hitNo description
PfamPF005382.5E-11129190IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGAPKQRWTP EEEAALKAGI NKYGVGKWST ILKDPEFKTI LRSRSNVDLK DKWRNMNCMA  60
NGLGSRRAGV VHKNSQVAPK HDEGTSMDSL AVEKDPVVLD AKPLSEVYVT TGDANLENQI  120
SRLNYKMRMD DLILDAITKL KEPQGSSRHA IAKYIEDHHS MPPDLERILT ANLMALTEKG  180
RLVKMILDGM QSCIQLPLLQ PDYRQFTFRL LFCCLWLNFL PTFCSRVLFF SLVSLIFLDT  240
RKISFCADHA AADS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099387.13e-74telomere repeat-binding factor 1 isoform X3
TrEMBLA0A0K1SBA36e-81A0A0K1SBA3_REHGL; Single MYB histone protein
STRINGMigut.L00217.1.p1e-71(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51222235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-48telomere repeat binding factor 1