PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00005772-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family GRF
Protein Properties Length: 337aa    MW: 37440.9 Da    PI: 8.3455
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00005772-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC82.34.1e-26122166145
                    WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                            d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e+
  SMil_00005772-RA_Salv 122 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVEN 166
                            79****************************************997 PP
2QLQ45.72e-165691136
                    QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                           s+F+ +Q+q+L+ Q+l++++++a++ vPpeL+  ++
  SMil_00005772-RA_Salv 56 SYFSSSQWQELELQALIFRHMSAGADVPPELVHLVK 91
                           79*****************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.9E-65692IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166618.6455792IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.2E-125790IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166726.215122166IPR014977WRC domain
PfamPF088791.9E-22123165IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
LCESLLYLLM DLDLKQWRDH HSQPTPSALP LFLSEPNRNL SAFLSDHSTR IPRMESYFSS  60
SQWQELELQA LIFRHMSAGA DVPPELVHLV KKSLITSPFY QYYPHFQPSL LQSGYWGRAG  120
MDPEPGRCRR TDGKKWRCSR DVVAGQKYCE RHMHRGRNRS RKPVENPTSA AEPLKNTTTA  180
APPHFTLSVP SHSTDLLQRP LDSVVRPFDS RDDGSQPGSE RTLRHFFDDW PPKPLHDSPN  240
AAATNLSISM PGNGNPSSDF SLKLGTGDGG NPSTATQLEG GNERDKPQLN WGVTWGTNPL  300
APMGGPLAEV LRSSTSNSSP TSVLHRPPRA PASEASY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077893.11e-129growth-regulating factor 3
TrEMBLA0A4D8ZZ590.0A0A4D8ZZ59_SALSN; Uncharacterized protein
STRINGVIT_08s0007g03760.t011e-110(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32832138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.13e-63growth-regulating factor 4