PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00005757-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 355aa    MW: 39824.8 Da    PI: 7.3742
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00005757-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001281303123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            + C +Cgk F  + + ++H +++
  SMil_00005757-RA_Salv 281 FMCRKCGKAFAVRGDWRTHEKNC 303
                            89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.45E-5193219No hitNo description
Gene3DG3DSA:3.30.160.607.3E-6197216IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.64197224IPR007087Zinc finger, C2H2
SMARTSM003550.58197219IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280199219IPR007087Zinc finger, C2H2
SuperFamilySSF576671.52E-6266301No hitNo description
Gene3DG3DSA:3.30.160.609.5E-6268301IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808281301IPR007087Zinc finger, C2H2
SMARTSM0035549281301IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
CVLYCTYSPF LSLSIKPASS SSPPFSSPTF FTMTDPHSNL YAQWLFKYNP LHHFPTSNPP  60
HHPFLHSYAA ANNHHYQTPP PSPPLREALP LLSRYEEQSC SGMDLENINK PSKTIQIPSS  120
SSAQEDDDDD NGVTVALHIG LPNPSAADLA SVMVSSDNGG DKEEAADLAA EYPITRLNKG  180
QYWIPTPSQI LIGPTQFSCP VCCKTFNRYN NMQMHMWGHG SQYRRGPESL RGTQPTGMLR  240
LPCYCCAPAC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP FMCRKCGKAF AVRGDWRTHE  300
KNCGKLWYCI CGSDFKHKRS LKDHIKAFGT GHGAYGVDGF EEEDEPASEV EQDED
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002277537.11e-179PREDICTED: zinc finger protein WIP2
SwissprotQ9SVY11e-142ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A4D9B0E70.0A0A4D9B0E7_SALSN; Uncharacterized protein
STRINGVIT_08s0007g08070.t011e-178(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-141C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]