PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00005752-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Trihelix

Protein Properties

Length: 486aa MW: 54430.4 Da PI: 6.3077

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00005752-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	28.6	3.7e-09	71	110	2	41
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrer 41 W ++e++aLi +r+e++ ++++k++k+lW+ +s kmre+ SMil_00005752-RA_Salv 71 WVQEETRALISLRKEIDMLFNTSKSNKHLWDNISLKMREK 110 *************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence Send to blast
MYMSEKPQQQ ESAIDFYNGG GKQEAGPLQN SNMIIQLPDG GGAAPEDAAA AHNPAHHASS 60 SAAPKKRAET WVQEETRALI SLRKEIDMLF NTSKSNKHLW DNISLKMREK DGNGNGSAKM 120 SYYKEIEEIL RERSRDGPNW KTSEAANTAG PPKVDSFMQF ADKGIDDASL TFGPVEGMLI 180 VLAGFTYSWI WKSRDRSIGP FRKPSLASKL CQSLLPLGFR LLLFSYMCIY RFMPFDELLK 240 HLSHALAVRL IPWQNNNVVA PSTLVLLDLV FKNSGEVPQQ SKIHFPDGGD LGSWGSPEKW 300 ANGRSTLNLE RRLDHEGHPL AITAADAVGA SGVSPWNWRE TPGSGEQTNT YDGRVIIVKL 360 GEYTKRIGID GSADAIKEAI KSAFRLRTKR AFWLEDEDNV VRTLDRDMPL GNYTLHVDEG 420 LTIKVCFYEE SGPMPVHTED KTFYTEDDFR DFLSRRGWIG LREYNGYRNV DSMDELLPGA 480 IYRGAN

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence Send to blast

MYMSEKPQQQ ESAIDFYNGG GKQEAGPLQN SNMIIQLPDG GGAAPEDAAA AHNPAHHASS  60
SAAPKKRAET WVQEETRALI SLRKEIDMLF NTSKSNKHLW DNISLKMREK DGNGNGSAKM  120
SYYKEIEEIL RERSRDGPNW KTSEAANTAG PPKVDSFMQF ADKGIDDASL TFGPVEGMLI  180
VLAGFTYSWI WKSRDRSIGP FRKPSLASKL CQSLLPLGFR LLLFSYMCIY RFMPFDELLK  240
HLSHALAVRL IPWQNNNVVA PSTLVLLDLV FKNSGEVPQQ SKIHFPDGGD LGSWGSPEKW  300
ANGRSTLNLE RRLDHEGHPL AITAADAVGA SGVSPWNWRE TPGSGEQTNT YDGRVIIVKL  360
GEYTKRIGID GSADAIKEAI KSAFRLRTKR AFWLEDEDNV VRTLDRDMPL GNYTLHVDEG  420
LTIKVCFYEE SGPMPVHTED KTFYTEDDFR DFLSRRGWIG LREYNGYRNV DSMDELLPGA  480
IYRGAN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ebi_A	2e-18	65	125	1	86	DNA binding protein GT-1
2jmw_A	2e-18	65	125	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071308.1	1e-121	trihelix transcription factor GT-4-like
Swissprot	Q9FX53	8e-86	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A4D9B8M9	1e-150	A0A4D9B8M9_SALSN; Uncharacterized protein
STRING	Migut.E00236.1.p	1e-114	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5113	21	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	3e-88	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]