PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00005696-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 330aa    MW: 35406.9 Da    PI: 10.0207
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00005696-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.54e-10108149647
                            HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            +eE+ l++ + ++ G+g+W+ I+r   k+Rt+ q+ s+ qky
  SMil_00005696-RA_Salv 108 KEEHRLFLLGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKY 149
                            6****************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0014102152IPR001005SANT/Myb domain
PfamPF002492.5E-7108149IPR001005SANT/Myb domain
CDDcd001671.66E-6108150No hitNo description
Gene3DG3DSA:1.10.10.602.7E-7108149IPR009057Homeodomain-like
SuperFamilySSF466893.67E-12108155IPR009057Homeodomain-like
TIGRFAMsTIGR015579.1E-13109152IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
LSLHVHGGGT RLYYFIAMAA MRSESSALDD SRCSQTGSEV SGGGGGGVGK GFMLFGVRVM  60
TEGSFRKSVS MNNLAQYDQL PQDSSHDVAA GYASDDVVHP PAGAASGKEE HRLFLLGLQK  120
VGKGDWRGIS RNYVKTRTPT QVASHAQKYF LRRNNHNRRR RRSSLFDITT DAVAGSAVDD  180
QMYQENSPQT PTKQQGKNVE KFPMANFPVA MTPVVVPIAT ETPMENLTLG QVNQLTNSPK  240
PIRPIPILPV PPSSKLACLN LNKTRTAVDQ PPSLSLNLSM SSQQPPPPQS QPQAANQEQP  300
PTPARHASAF QAMPAAGFNG SGGDSMIIVA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00630PBMTransfer from PK17526.1Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086441.11e-127transcription factor MYB1R1
TrEMBLA0A4D9BPI41e-132A0A4D9BPI4_SALSN; Uncharacterized protein
STRINGMigut.L01371.1.p1e-103(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA114232225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70000.21e-47MYB_related family protein