PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00005679-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family LBD
Protein Properties Length: 312aa    MW: 33691.9 Da    PI: 8.3682
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00005679-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260132.61.6e-411712692100
                 DUF260   2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                            CaaCk+lrr+Ca++C+++pyf  +qp++fa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq++ 
  SMil_00005679-RA_Salv 171 CAACKLLRRRCAQECPFSPYFSPHQPHRFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQV 258
                            **************************************************************************************** PP

                 DUF260  90 lkaelallkee 100
                            l+ael+++++e
  SMil_00005679-RA_Salv 259 LQAELNAVRTE 269
                            ******99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.123169270IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-41171267IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MAVVETVDEV EKVEGRGGGG GWRWWIPKVE GRGGWRWQMA VVEADGGGRS NSLHQIWGSR  60
CTRRTAVVET VDEVEMAEKT AMAGRGEKGS GGGGGNGGGG GGGNGKGERG EKERGEEKTG  120
PIGVGRPKKE SEPIGLGWRE ERFEEIGKKI KRELDGAGAG HTGTLNTVTL CAACKLLRRR  180
CAQECPFSPY FSPHQPHRFA SVHKVFGASN VSKMLMEVPE SQRADAANSL VYEANVRLRD  240
PVYGCMGAIS ALQQQVQVLQ AELNAVRTEI FKYKYKESNM LPSHHVSLLS SVTSSSAADF  300
STISTENMTY FG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-4317128312124LOB family transfactor Ramosa2.1
5ly0_B7e-4317128312124LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021617781.12e-94LOB domain-containing protein 15
TrEMBLA0A2C9VL824e-93A0A2C9VL82_MANES; Uncharacterized protein
STRINGcassava4.1_031813m7e-94(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.15e-70LOB domain-containing protein 15