PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00005671-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family CPP
Protein Properties Length: 596aa    MW: 65829.6 Da    PI: 7.8831
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00005671-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR46.38.6e-15187226242
                    TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                            ++k+CnCk+s+Clk+YCeCfa+g++C+  C+C +C+N+ e+
  SMil_00005671-RA_Salv 187 KQKQCNCKHSRCLKLYCECFASGVYCDG-CNCVNCHNNVEN 226
                            89**************************.********9875 PP
2TCR51.22.5e-16270309140
                    TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                            k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  SMil_00005671-RA_Salv 270 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNYE 309
                            589***********************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.8E-17186226IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.364187310IPR005172CRC domain
PfamPF036381.1E-11188223IPR005172CRC domain
SMARTSM011146.2E-20270311IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.7E-12273308IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
LVKSLLWDFR FVICFSSMEQ RDEHDFPPKK PPPPQPEATT AGVDFPARKL VRQLDFTGGA  60
STMEQRQQVK LEQPPPQLLS HLVKPPPQML FMTMQQPPPP PSHPSVRPPL HSIGAIDLHM  120
FSLVVRNPPA PTPVGEKEGG AVSHGNLQTD ILYQYVLNNY FLLRKPESPR SRPGQNVNEI  180
KDGTPKKQKQ CNCKHSRCLK LYCECFASGV YCDGCNCVNC HNNVENDTAR REAVEATLER  240
NPTAFRPKIA SSPHGARDNR EEAGEIVSGK HNKGCHCKKS GCLKKYCECF QANILCSENC  300
KCMDCKNYEG SEERQALFHG DHVNNMAFIQ QAANAAITGA IGSSGYGSPP LTKKRKGQDI  360
YFGSAVKDPV HRLGQLQQAT HTKASVPSTL SSSVTAAHPV STPTLGSLKF TYRSLLADII  420
QPQDLKELCS VLAVYSREAA KMLTEERNAA EKQAEESRKT SLASTIQDGS QSQKHSEAEK  480
AEANYLSSEN QAEKVAPEES CSDGADVSKG RPMSPSTLAL MCDEQDTMFT AAHSPSRLEV  540
QNNVSSQLPL EHRTTEAYEE QERIILTKFR DCLNRLITLG EIKGKQVFIL RVSIAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-311793192132Protein lin-54 homolog
5fd3_B1e-311793192132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093606.10.0protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD11e-177TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A4D8YN360.0A0A4D8YN36_SALSN; Uncharacterized protein
STRINGVIT_11s0016g03680.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24012455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-165Tesmin/TSO1-like CXC domain-containing protein