PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00005643-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family WRKY
Protein Properties Length: 329aa    MW: 37186.1 Da    PI: 6.377
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00005643-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.17.5e-33157215159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            ldDgy+WrKYGqK vk+s+fprsYYrCts+ C vkk+vers edp++v++tYeg+H h+
  SMil_00005643-RA_Salv 157 LDDGYRWRKYGQKAVKNSPFPRSYYRCTSTACGVKKRVERSCEDPTIVVTTYEGTHAHP 215
                            59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-33142217IPR003657WRKY domain
SuperFamilySSF1182901.96E-28149217IPR003657WRKY domain
PROSITE profilePS5081131.399152217IPR003657WRKY domain
SMARTSM007746.0E-37157216IPR003657WRKY domain
PfamPF031065.4E-26158215IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
LMEEKQKESG DXKIAFSDQM MIPESSSGSG FFDLSSTTDH HHKTNSFRFV DMLSVQDFTN  60
PSSIFDDLLH TITAPFPPPP EYSEVVNTPA TPNSSSVSSS STEAAAANDD HKRIDEEEEE  120
QDQEKTRKLQ LKPKKKNQKR QREPRFAFMT KSEIDNLDDG YRWRKYGQKA VKNSPFPRSY  180
YRCTSTACGV KKRVERSCED PTIVVTTYEG THAHPCPLTP RGSFAVMPER GAMLDGGMLH  240
RYHHQLTPPQ PMQHQPYFHN LLTSPLSLIT TTANTNANTN TNTNPNPALF ANLFQERPFY  300
PSAAARDDGL LQDMLPSQMF KGQKGEEEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-271502171077Probable WRKY transcription factor 4
2lex_A7e-271502171077Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM8231440.0KM823144.1 Salvia miltiorrhiza WRKY protein (WRKY21) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071373.11e-94probable WRKY transcription factor 48
RefseqXP_012842104.17e-95PREDICTED: probable WRKY transcription factor 48
SwissprotQ9FGZ42e-55WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBLA0A0D5Y9990.0A0A0D5Y999_SALMI; WRKY protein
STRINGMigut.N00035.1.p3e-94(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13092479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.12e-46WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]