PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00005539-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | NAC | ||||||||
Protein Properties | Length: 363aa MW: 40694.4 Da PI: 7.8256 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161.5 | 3.2e-50 | 23 | 148 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d SMil_00005539-RA_Salv 23 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGAD 109 79***************************.89***************8778899********************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + s++ + +glkktLvfy+g+apkg +t+W+m+eyrl SMil_00005539-RA_Salv 110 RMIRSENLRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 148 *************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.1E-56 | 22 | 168 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.912 | 22 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.3E-25 | 24 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MAIAADMNNQ ESKQDEHEND VVMPGFRFHP TEEELVEFYL RRKVEGKRFN VELITFLDLY 60 RYDPWELPAL AAIGEKEWYF YVPRDRKYRN GDRPNRVTTS GYWKATGADR MIRSENLRSI 120 GLKKTLVFYS GKAPKGIRTS WIMNEYRLPH HDTERLQKAE ISLCRVYKRA GVEDHPSLPR 180 CLPTKATASS SRGSQQARKQ QETSTSSRGL IFQPSYGGSP QQTDGKLSET SPTSSADIGT 240 SLALSHGTSF SINPLAPIVA GEDGHLQQQP KTIFSTAASS SNAIDDLHKF VQNYSSSQQA 300 IGHESHHHYN PPNLVSHFAA LQPETQELGA VPASLPAAAA YSDRLWEWSG ISEAGKDYSN 360 LFK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-55 | 24 | 169 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-55 | 24 | 169 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-55 | 24 | 169 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-55 | 24 | 169 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-55 | 24 | 169 | 22 | 168 | NAC domain-containing protein 19 |
3swm_B | 3e-55 | 24 | 169 | 22 | 168 | NAC domain-containing protein 19 |
3swm_C | 3e-55 | 24 | 169 | 22 | 168 | NAC domain-containing protein 19 |
3swm_D | 3e-55 | 24 | 169 | 22 | 168 | NAC domain-containing protein 19 |
3swp_A | 3e-55 | 24 | 169 | 22 | 168 | NAC domain-containing protein 19 |
3swp_B | 3e-55 | 24 | 169 | 22 | 168 | NAC domain-containing protein 19 |
3swp_C | 3e-55 | 24 | 169 | 22 | 168 | NAC domain-containing protein 19 |
3swp_D | 3e-55 | 24 | 169 | 22 | 168 | NAC domain-containing protein 19 |
4dul_A | 2e-55 | 24 | 169 | 19 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-55 | 24 | 169 | 19 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00257 | DAP | Transfer from AT2G02450 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022897039.1 | 1e-176 | NAC domain-containing protein 35-like | ||||
Swissprot | Q9ZVP8 | 1e-112 | NAC35_ARATH; NAC domain-containing protein 35 | ||||
TrEMBL | A0A2U5GF65 | 0.0 | A0A2U5GF65_SALMI; NAC transcription factor 5 | ||||
STRING | cassava4.1_009166m | 1e-147 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3888 | 24 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.1 | 1e-114 | NAC domain containing protein 35 |
Publications ? help Back to Top | |||
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