PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00005489-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | LBD | ||||||||
Protein Properties | Length: 202aa MW: 21966 Da PI: 8.4753 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.2 | 2.5e-42 | 35 | 134 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +CaaCk+lrr+Ca++C+++pyf +qp++fa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq++ SMil_00005489-RA_Salv 35 PCAACKLLRRRCAQECPFSPYFSPHQPHRFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQ 122 7*************************************************************************************** PP DUF260 89 qlkaelallkee 100 l+ael+++++e SMil_00005489-RA_Salv 123 VLQAELNAVRTE 134 *******99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.652 | 34 | 135 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.9E-42 | 35 | 132 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MSTERERFEE IGKKIKRELD GAGAGHTGTL NTVTPCAACK LLRRRCAQEC PFSPYFSPHQ 60 PHRFASVHKV FGASNVSKML MEVPESQRAD AANSLVYEAN VRLRDPVYGC MGAISALQQQ 120 VQVLQAELNA VRTEIFKYKY KESNMLPSHH ASLLSSAAVS VAAPVPPPPP PPLTSASLYT 180 SVTSSSAADF STISTENMTY FG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-45 | 35 | 148 | 11 | 124 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-45 | 35 | 148 | 11 | 124 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021617781.1 | 1e-102 | LOB domain-containing protein 15 | ||||
Swissprot | Q8L5T5 | 2e-78 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | A0A2C9VL82 | 1e-101 | A0A2C9VL82_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_031813m | 1e-102 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 5e-76 | LOB domain-containing protein 15 |
Publications ? help Back to Top | |||
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