PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00005489-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family LBD
Protein Properties Length: 202aa    MW: 21966 Da    PI: 8.4753
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00005489-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.22.5e-42351341100
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                            +CaaCk+lrr+Ca++C+++pyf  +qp++fa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq++
  SMil_00005489-RA_Salv  35 PCAACKLLRRRCAQECPFSPYFSPHQPHRFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQ 122
                            7*************************************************************************************** PP

                 DUF260  89 qlkaelallkee 100
                             l+ael+++++e
  SMil_00005489-RA_Salv 123 VLQAELNAVRTE 134
                            *******99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.65234135IPR004883Lateral organ boundaries, LOB
PfamPF031952.9E-4235132IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MSTERERFEE IGKKIKRELD GAGAGHTGTL NTVTPCAACK LLRRRCAQEC PFSPYFSPHQ  60
PHRFASVHKV FGASNVSKML MEVPESQRAD AANSLVYEAN VRLRDPVYGC MGAISALQQQ  120
VQVLQAELNA VRTEIFKYKY KESNMLPSHH ASLLSSAAVS VAAPVPPPPP PPLTSASLYT  180
SVTSSSAADF STISTENMTY FG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-453514811124LOB family transfactor Ramosa2.1
5ly0_B2e-453514811124LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021617781.11e-102LOB domain-containing protein 15
SwissprotQ8L5T52e-78LBD15_ARATH; LOB domain-containing protein 15
TrEMBLA0A2C9VL821e-101A0A2C9VL82_MANES; Uncharacterized protein
STRINGcassava4.1_031813m1e-102(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.15e-76LOB domain-containing protein 15
Publications ? help Back to Top
  1. Ohashi-Ito K,Iwamoto K,Fukuda H
    LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements.
    Plant Cell Physiol., 2018. 59(5): p. 989-996
    [PMID:29444288]