PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00005434-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | Nin-like | ||||||||
Protein Properties | Length: 319aa MW: 36098 Da PI: 6.6651 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 82.7 | 3.5e-26 | 227 | 277 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + ++ l+d +yF+lpi+dAA++L++c+Tv+K+iCR++G+ RWP+Rki+s+ SMil_00005434-RA_Salv 227 TRNLGLKDFVEYFHLPIEDAARKLNICPTVMKKICRKHGVLRWPYRKINSI 277 67999********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.95 | 217 | 297 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.8E-23 | 229 | 277 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
LKKKPSHTAV QRGVAAAAGT AAHLEMADST SENPLLLCPS QGQDQNYFNL DDLLETENLL 60 SDPVIWQDFS GNSPAPDSAF LQHYQAPENP VSMALSVFTA PRAQYNCACC QILREITHTN 120 GMYLKRLEIH GVFGIITHAL LGIYECGSSL QTQMFDFHKE STVTVKNFLV AYYEVCRQEG 180 YSPIQDPLSS FYEALSVGLD QATPHDFPGD YEAGSVKIPL AMQRERTRNL GLKDFVEYFH 240 LPIEDAARKL NICPTVMKKI CRKHGVLRWP YRKINSIERK ISKSEKILEA CADDERQRAL 300 EDIQKYRKQL NNIYAQFTN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088847.1 | 1e-104 | uncharacterized protein LOC105169981 | ||||
TrEMBL | A0A4D9APW7 | 1e-126 | A0A4D9APW7_SALSN; Glutamate receptor, ionotropic, plant | ||||
STRING | Migut.B01423.1.p | 2e-96 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3505 | 20 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59580.2 | 5e-16 | Nin-like family protein |