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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
SMil_00005383-RA_Salv |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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| Family |
BBR-BPC |
| Protein Properties |
Length: 290aa MW: 32299 Da PI: 10.1112 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| SMil_00005383-RA_Salv | genome | NDCTCM | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 345.6 | 1.1e-105 | 1 | 290 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd..........maflqrdkalaernkal 74
md+d+ rn+gyyep lk lglqlmss+aerd+k+ r++ + + + ++a+++rd m++ rd+++++
SMil_00005383-RA_Salv 1 MDEDSL--RNWGYYEPP--LK-GLGLQLMSSLAERDTKPflsgRDNPV-MVSANGAFHHRDcvvteppvthMDY-VRDSWINH----- 76
788855..9********..77.9******************9776666.99***********************.9******9..... PP
GAGA_bind 75 verdnkllalllvenslasalpvgvqvlsgtk.sidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpke 161
++k+l++ + +p +++vl +++ s + +q++++pq ++++++ e +e+ p e++ ++ke+ kkr+ a++pk+
SMil_00005383-RA_Salv 77 ---REKFLHMFPG-------NP-YSSVLAESSgSHHPMQMVQQPQQQPPQQQ--PETAKETRPSMEEPVVKKESGPAKKRAAAATPKT 151
...7899999993.......33.34444444404455677777776655544..4444566666777999999999999********* PP
GAGA_bind 162 kkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstk 249
+kakk++k++ ++k++ + + + +r+k+ kk++++v+ng+++D++++P+PvCsCtG+++qCY+WG+GGWqSaCCtttiS+yPLP+s k
SMil_00005383-RA_Salv 152 PKAKKPRKNP-APKENGNGNPSVQRAKTAKKNVEVVINGIDMDITGIPIPVCSCTGTPQQCYRWGCGGWQSACCTTTISMYPLPMSQK 238
********65.5555555444458**************************************************************** PP
GAGA_bind 250 rrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
rrgaRiagrKmSqgafkk+LekLaaeGy+++np+DL+++WAkHGtnkfv ir
SMil_00005383-RA_Salv 239 RRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTYWAKHGTNKFVIIR 290
**************************************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 290 aa
Download sequence Send
to blast |
MDEDSLRNWG YYEPPLKGLG LQLMSSLAER DTKPFLSGRD NPVMVSANGA FHHRDCVVTE 60
PPVTHMDYVR DSWINHREKF LHMFPGNPYS SVLAESSGSH HPMQMVQQPQ QQPPQQQPET 120
AKETRPSMEE PVVKKESGPA KKRAAAATPK TPKAKKPRKN PAPKENGNGN PSVQRAKTAK 180
KNVEVVINGI DMDITGIPIP VCSCTGTPQQ CYRWGCGGWQ SACCTTTISM YPLPMSQKRR 240
GARIAGRKMS QGAFKKVLEK LAAEGYNFAN PIDLRTYWAK HGTNKFVIIR
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
