PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00005270-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | LBD | ||||||||
Protein Properties | Length: 201aa MW: 21740.2 Da PI: 10.2504 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 74 | 2.9e-23 | 4 | 135 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeer............................. 54 +C++C+vlr++C ++C ++p++ p++q++++ +++k++G++ +++l++a p + r SMil_00005270-RA_Salv 4 SCNGCRVLRKGCGDNCSIRPCLewiksPDSQANATVFLAKFYGRAGLMNLINAGPSNLRpgpsallsisfqqipasiqylltylslrh 91 6**************************************************************************************9 PP DUF260 55 edamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 ++++sl+yeA+ r+ +P+yG++g++++ ++ql+++++e++l++ SMil_00005270-RA_Salv 92 AAIFRSLLYEACGRIVNPIYGSIGLLWSDSWQLCHSAVEAVLRG 135 99***********************************9998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 11.317 | 3 | 138 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-9 | 4 | 63 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.6E-7 | 90 | 131 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MRISCNGCRV LRKGCGDNCS IRPCLEWIKS PDSQANATVF LAKFYGRAGL MNLINAGPSN 60 LRPGPSALLS ISFQQIPASI QYLLTYLSLR HAAIFRSLLY EACGRIVNPI YGSIGLLWSD 120 SWQLCHSAVE AVLRGAPVTQ MTTEPKDGPP LKAYDIRHVN KEHKFPPPTT FAGSGTAAGS 180 SARGSGLGPR RLTSRLATIP R |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099556.1 | 6e-77 | LOB domain-containing protein 41 | ||||
Swissprot | Q9M886 | 3e-70 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A4D9AKL1 | 1e-77 | A0A4D9AKL1_SALSN; Uncharacterized protein | ||||
STRING | XP_008230405.1 | 2e-73 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA886 | 24 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 3e-72 | LOB domain-containing protein 41 |