PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00005258-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

HRT-like

Protein Properties

Length: 427aa MW: 47857 Da PI: 9.7568

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00005258-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	52.8	6.4e-17	269	299	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv++++GsvC+ +Pv gRKRC+ HKG R+ SMil_00005258-RA_Salv 269 ICGVATGHGSVCTSPPVAGRKRCAVHKGLRV 299 8*****************************7 PP
2	HRT-like	34.4	3.6e-11	357	378	1	22
HRT-like 1 iCGviledGsvCkrqPvkgRKR 22 +CG+iledGs+Ckr+Pv+g+KR SMil_00005258-RA_Salv 357 TCGIILEDGSPCKRSPVRGNKR 378 7********************9 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000033	Biological Process	regulation of seed dormancy process
GO:0097100	Molecular Function	supercoiled DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MGLGARSSAS DTSSTTTTRL KREDFRRTKH DSAFSQWKIL IGAFDWEDYS MGKEGVERYR 60 TENLPNWTSC PGVYELGIAT SRPQSGRETR KLDSSSVIPV YLGQADNLRN RLQQYGRDGA 120 HLENGYTSSK TVSCQSISSH KGPGLFTDIF SRGLPIVYRC APIKSKNDAE ITEKQLLDKF 180 DYAWNKGSNV SRRQDDIHKK LERLEKTSKF SLLAKEFLFS NKREVGIKIR NGSNMNGTGN 240 STIFSRIHGV RRLQETPMHS GYGDCGDNIC GVATGHGSVC TSPPVAGRKR CAVHKGLRVN 300 GYNSKLATEG KLPLAANPKS GVETYQEYSD NQDQKQRYIT ENHHPCEQTS GKKFNLTCGI 360 ILEDGSPCKR SPVRGNKRNG KVRIEKEDMK AKGPPLRFPM PYSCVFLLKM ILETVYEDER 420 EPFEAAK

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MGLGARSSAS DTSSTTTTRL KREDFRRTKH DSAFSQWKIL IGAFDWEDYS MGKEGVERYR  60
TENLPNWTSC PGVYELGIAT SRPQSGRETR KLDSSSVIPV YLGQADNLRN RLQQYGRDGA  120
HLENGYTSSK TVSCQSISSH KGPGLFTDIF SRGLPIVYRC APIKSKNDAE ITEKQLLDKF  180
DYAWNKGSNV SRRQDDIHKK LERLEKTSKF SLLAKEFLFS NKREVGIKIR NGSNMNGTGN  240
STIFSRIHGV RRLQETPMHS GYGDCGDNIC GVATGHGSVC TSPPVAGRKR CAVHKGLRVN  300
GYNSKLATEG KLPLAANPKS GVETYQEYSD NQDQKQRYIT ENHHPCEQTS GKKFNLTCGI  360
ILEDGSPCKR SPVRGNKRNG KVRIEKEDMK AKGPPLRFPM PYSCVFLLKM ILETVYEDER  420
EPFEAAK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011093698.1	1e-164	protein EFFECTOR OF TRANSCRIPTION 2
TrEMBL	A0A4D8Z860	0.0	A0A4D8Z860_SALSN; Uncharacterized protein
STRING	Migut.J00591.1.p	1e-150	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7741	23	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	7e-78	effector of transcription2