PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00005234-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C3H
Protein Properties Length: 501aa    MW: 53324.6 Da    PI: 7.5073
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00005234-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.83.1e-125984227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                           +++ C +++rtG+C yG+rC+F+H++
  SMil_00005234-RA_Salv 59 DEPDCIYYLRTGFCGYGNRCRFNHPR 84
                           6899********************96 PP
2zf-CCCH37.73.4e-12106130327
                            S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                            ++ C++++rtG Ck+G++Ck++H++
  SMil_00005234-RA_Salv 106 EPVCQYYMRTGMCKFGASCKYHHPK 130
                            789********************96 PP
3zf-CCCH34.63.1e-11151176227
                            -S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                            ++++C+++ +tG+Ck+G +CkF+H++
  SMil_00005234-RA_Salv 151 GEKECSYYIKTGQCKFGVTCKFHHPQ 176
                            6789********************97 PP
4zf-CCCH382.8e-12321347127
                            --S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                            +++++C++++rtG Ck+G++Ck++H+p
  SMil_00005234-RA_Salv 321 PGQPECQYYLRTGDCKFGASCKYHHPP 347
                            5789*********************97 PP
5zf-CCCH36.67.3e-12369393327
                            S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                             +lC+++a++G Ck+G++CkF H++
  SMil_00005234-RA_Salv 369 APLCSHYAQNGVCKFGPSCKFDHPM 393
                            68*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.5585785IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-55784IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-95984IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-66185IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-56384IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.455103131IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-6103130IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-9106130IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-6106131IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4108129IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.051149177IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-4149176IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-8151176IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-6151177IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-4155175IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.164320348IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-6320347IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9322347IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-5325347IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-4326347IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.309366394IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-7366393IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-6368395IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-9369393IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-5371391IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MERYSATQAM EPRSVDPAAE WTGQGGETEL EGEFDFVNAG PMWRLHLGEG PESYPERPDE  60
PDCIYYLRTG FCGYGNRCRF NHPRDRGAAM GALRATGGEY PERHGEPVCQ YYMRTGMCKF  120
GASCKYHHPK HGAGSSSPIT LNFYGYPLRQ GEKECSYYIK TGQCKFGVTC KFHHPQPAGI  180
QMPAPGAGPG PLAGPAAMPT PTLYPTVQSP SVQSSQQYGI LHGNWPVSRP TMLPGSYVPG  240
SYGPMLLAPG VVPVPGWNPY SAQVSHGALQ STQPTVGAGP VYGLTQLPPS STTYMGGHFS  300
GTSLAGPSSS SQKEHGFPDR PGQPECQYYL RTGDCKFGAS CKYHHPPEWS TQKSIVILNP  360
MGLPMRPGAP LCSHYAQNGV CKFGPSCKFD HPMRALSYST SASSLTDMPV APYPVGSTNA  420
TLAPSSSSSL DLRPELLSGF SKDAFSANLS STNSSSASIG STFSRSGPIP EFGIQHSGQG  480
TASSTGGSSS NPEGEVKISV E
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090931.10.0zinc finger CCCH domain-containing protein 32
SwissprotQ84W911e-155C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A4D8YIZ00.0A0A4D8YIZ0_SALSN; Uncharacterized protein
STRINGMigut.G00186.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24122459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-130C3H family protein