PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00005233-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

MYB_related

Protein Properties

Length: 1093aa MW: 122053 Da PI: 8.7808

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00005233-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29	2.6e-09	5	40	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 rWTteE +++da +++ ++ Wk+I + + +R+++++ SMil_00005233-RA_Salv 5 RWTTEELSRFYDAYRKYNKD-WKKIGSAVR-NRSPEMV 40 9***************99.*****.*9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	10.309	1	52	IPR017884	SANT domain
SMART	SM00717	7.3E-5	2	50	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.79E-9	4	51	IPR009057	Homeodomain-like
Pfam	PF00249	1.0E-6	5	40	IPR001005	SANT/Myb domain
CDD	cd00167	1.97E-5	5	48	No hit	No description
Pfam	PF06584	1.3E-31	589	689	IPR033471	DIRP domain
SMART	SM01135	7.1E-56	589	690	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1093 aa Download sequence Send to blast
MLGPRWTTEE LSRFYDAYRK YNKDWKKIGS AVRNRSPEMV EALYTMNKAY LSLPHGTASS 60 DGLIAMMTDH YCNLAGSDSD LESNDGTGSS RKIQKRARGK VQPTTSKASD DQFVSHSPVT 120 VPDYGFLSLL KKKRSGGSRP CAVGKRTPRF PVSFPSERFN AESNVSPRRP GLKLKANAND 180 DEVAQEIAIA LAEASQKGGS SKVSRTPSKI AESVMSSPFR YAQRKHSLAE MTSHQNAALD 240 EEELEGSTEA DTGELSRYKP SVVKEKTKKL KGKNYEIGNN GEHLLDDIKE ECSGTEEGQR 300 FGAMKGNFHV EVTDTKISRS SVQSQRKKSK KVLFGKDDAP AFDALQTLAD LSLMMPLGDE 360 DDSRLQFKDD PVDELLSTES LPMNQKKEKR RYSVVRMKGH KPISSSEIAP SKTSKPGKAS 420 AIGSVPEEDQ DLQLAITKTP RRKQKMQASK ILKTEAHPDI HLSRSPQVED GDPGKKLMNR 480 SKKSSQSGSP HLLRNSENSS SADIRKEACE PAQSVAHVPV AHQVNLPTKV RSRRKMDLKE 540 RQKLLDKVSN DQSDPSIASV HDRALNSKKN MSICLSNPRL RRWCTYEWFY SAIDYPWFAK 600 REFVEYLYHV GLGHVPRLTR VEWGVIRSSL GKPRRFSEQF LKEEKDKLNL YRDSVRKHYT 660 ELREGVREGL PTDLARPLSV GQRVIAIHPK TREVHDGSVL TVDHSRCRVQ FDRHELGVEF 720 VMDIDCMPLN PLENLPIALV GKKPISADRF FENFNELKVG GRIQECMKLC PGDKVDATDD 780 ISHLSLSADP ATLLNQTKVS TANTNMQMRI GSAETADYQQ MAYSQPSALA QIQAKEADVQ 840 ALAELTRALE KKEAVVQELR RMNDDVSRYQ IDGDSPLKDS EPFKKQYAAV LVQLNEANEQ 900 VSSALYCLRQ RNTYQGNMPL LWSRPGTNFA DPGGEFSLDR SACQTIESGP HVNEIIDSSR 960 TKARAMVDAA MQAMSSLKCR EDTTEKIEEA IDYVNDRLPS DDSSAPMAPN PKATSASDSE 1020 SQIPFELISK CVATLLMIQK CTQRQFPPSD VAQILDSAVT SLQPRSSQNL PVYTEIQKCM 1080 GIIRNQIMAL IPT

Sequence ? help Back to Top

Protein Sequence Length: 1093 aa Download sequence Send to blast

MLGPRWTTEE LSRFYDAYRK YNKDWKKIGS AVRNRSPEMV EALYTMNKAY LSLPHGTASS  60
DGLIAMMTDH YCNLAGSDSD LESNDGTGSS RKIQKRARGK VQPTTSKASD DQFVSHSPVT  120
VPDYGFLSLL KKKRSGGSRP CAVGKRTPRF PVSFPSERFN AESNVSPRRP GLKLKANAND  180
DEVAQEIAIA LAEASQKGGS SKVSRTPSKI AESVMSSPFR YAQRKHSLAE MTSHQNAALD  240
EEELEGSTEA DTGELSRYKP SVVKEKTKKL KGKNYEIGNN GEHLLDDIKE ECSGTEEGQR  300
FGAMKGNFHV EVTDTKISRS SVQSQRKKSK KVLFGKDDAP AFDALQTLAD LSLMMPLGDE  360
DDSRLQFKDD PVDELLSTES LPMNQKKEKR RYSVVRMKGH KPISSSEIAP SKTSKPGKAS  420
AIGSVPEEDQ DLQLAITKTP RRKQKMQASK ILKTEAHPDI HLSRSPQVED GDPGKKLMNR  480
SKKSSQSGSP HLLRNSENSS SADIRKEACE PAQSVAHVPV AHQVNLPTKV RSRRKMDLKE  540
RQKLLDKVSN DQSDPSIASV HDRALNSKKN MSICLSNPRL RRWCTYEWFY SAIDYPWFAK  600
REFVEYLYHV GLGHVPRLTR VEWGVIRSSL GKPRRFSEQF LKEEKDKLNL YRDSVRKHYT  660
ELREGVREGL PTDLARPLSV GQRVIAIHPK TREVHDGSVL TVDHSRCRVQ FDRHELGVEF  720
VMDIDCMPLN PLENLPIALV GKKPISADRF FENFNELKVG GRIQECMKLC PGDKVDATDD  780
ISHLSLSADP ATLLNQTKVS TANTNMQMRI GSAETADYQQ MAYSQPSALA QIQAKEADVQ  840
ALAELTRALE KKEAVVQELR RMNDDVSRYQ IDGDSPLKDS EPFKKQYAAV LVQLNEANEQ  900
VSSALYCLRQ RNTYQGNMPL LWSRPGTNFA DPGGEFSLDR SACQTIESGP HVNEIIDSSR  960
TKARAMVDAA MQAMSSLKCR EDTTEKIEEA IDYVNDRLPS DDSSAPMAPN PKATSASDSE  1020
SQIPFELISK CVATLLMIQK CTQRQFPPSD VAQILDSAVT SLQPRSSQNL PVYTEIQKCM  1080
GIIRNQIMAL IPT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071459.1	0.0	protein ALWAYS EARLY 3
TrEMBL	A0A4D9A8K7	0.0	A0A4D9A8K7_SALSN; Uncharacterized protein
STRING	Migut.N00106.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3312	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding