PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00005224-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | LBD | ||||||||
Protein Properties | Length: 286aa MW: 32291.4 Da PI: 8.1261 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 107.1 | 1.4e-33 | 10 | 109 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 aCa+Ck++rr+C+++C lap fpa+qp+ f nvh+lFG++n++kllk+l++++r +a++s+ ++A +r r Pv G++ +++l q++ SMil_00005224-RA_Salv 10 ACASCKFQRRRCTPQCLLAPFFPADQPQVFHNVHRLFGVKNIQKLLKELHPDQRAIAIKSVKFHAAMRERYPVCGCLVEVQNLAYQIQ 97 7*************************************************************************************** PP DUF260 89 qlkaelallkee 100 +++el+++ ++ SMil_00005224-RA_Salv 98 LAEKELHAVLQQ 109 ******998776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.386 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.5E-32 | 10 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MTLRGSSGQA CASCKFQRRR CTPQCLLAPF FPADQPQVFH NVHRLFGVKN IQKLLKELHP 60 DQRAIAIKSV KFHAAMRERY PVCGCLVEVQ NLAYQIQLAE KELHAVLQQL LYYRNTAMVA 120 ALIQQDDQPE YNLVAAHPSS CSNNVNRDHY NKDCNDVDSL CSYSNNDYNN NANSAVMQSQ 180 MPTSQTIPQR PVRFFAMPPR RQPQNQADAR RDADIALLNR QVEALTAGFE DLRVAVSNAW 240 PGPQHHAAPE HPRRAGGHHR HRPHPPVEET DLDSDTITLC SLSRGD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-27 | 6 | 113 | 7 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-27 | 6 | 113 | 7 | 114 | LOB family transfactor Ramosa2.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011071735.1 | 4e-67 | LOB domain-containing protein 27 | ||||
TrEMBL | A0A4D9A103 | 5e-79 | A0A4D9A103_SALSN; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1449 | 23 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 6e-38 | LOB domain-containing protein 27 |