PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00005194-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family CO-like
Protein Properties Length: 453aa    MW: 50953.7 Da    PI: 6.0521
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00005194-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box322.5e-104790340
               zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                           +r C+++ +k+++++C+ ++ +lC++C ++ H+       H++v
  SMil_00005194-RA_Salv 47 ARACDNCVRKRATWYCTADDAFLCQSCDSTVHSAnplarrHERV 90
                           678*****************************667888888876 PP
2CCT67.53.6e-23397440144
                    CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                            Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  SMil_00005194-RA_Salv 397 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 440
                            9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011911.0644592IPR000315B-box-type zinc finger
SMARTSM003368.6E-114592IPR000315B-box-type zinc finger
PfamPF006434.4E-94790IPR000315B-box-type zinc finger
CDDcd000217.53E-104892No hitNo description
PfamPF062037.7E-18397439IPR010402CCT domain
PROSITE profilePS5101716.083397439IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
LLFISFFLIV HTHTHTHTYI YRRTKXKRNS MVSSEKKLAN IVGGKSARAC DNCVRKRATW  60
YCTADDAFLC QSCDSTVHSA NPLARRHERV RLKTVSSLKT FGDGLRISVP AWHRGFTRKA  120
RTPRKGKHAK YGPADGLVSS NRTHVVPEIS GEEHSHDESN EEQLLYRVPI FDPSVAELCI  180
SVNSNESANG NPNDGEITPG SVPGSKPEFN EFSEDDMAHV HGFLPSEMDL AEFAADVESL  240
LGKGLDDEAF DIEGLGILDD ERERESCLGS ERVKVEDEEI DDLNIDGEYI GVGRETFELN  300
FDYDSPINGE EEEVENKEIS MEKILRSNFE DSNKVYDAKK IFLRLDYGGV MSAWDDERSP  360
WTTGERPELN PDDCLSDCLG TCAMGGHVAA AGGDGGREAR VSRYREKRRT RLFSKKIRYE  420
VRKLNAEKRP RMKGRFVKRA NFVPSAAFAL INK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1407423RRTRLFSKKIRYEVRKL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9863316e-36KF986331.1 Lagerstroemia indica zinc finger protein CONSTANS-LIKE 5 (COL5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076793.20.0zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A4D9BJF20.0A0A4D9BJF2_SALSN; Uncharacterized protein
STRINGMigut.L01064.1.p1e-160(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15392470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.13e-86B-box type zinc finger protein with CCT domain