PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00005188-RA_Salv
Common NameWRKY37
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family WRKY
Protein Properties Length: 220aa    MW: 24786.2 Da    PI: 7.7692
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00005188-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY109.21.9e-34156213259
                            --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            +Dgy+WrKYGqK vk+s++prsYYrCt+++Cpvkk+vers +dp++v++tYeg+Hnh+
  SMil_00005188-RA_Salv 156 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCPVKKRVERSFQDPSIVITTYEGQHNHH 213
                            8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-36140215IPR003657WRKY domain
SuperFamilySSF1182902.88E-30147215IPR003657WRKY domain
PROSITE profilePS5081132.707150215IPR003657WRKY domain
SMARTSM007746.0E-40155214IPR003657WRKY domain
PfamPF031064.8E-27156213IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MSEDHLREFY YHHPYNEDRH GGAATFPYSG ADAHLHMFDP SSYLSFTEFL HGPTDHNSLS  60
AACGPTPPTS KEEEKAAGGN ETPATPNSSI SSSSTEVAAA EEDSNKSKKE KESFIAHGDE  120
ENSKKEGSKG KKKGEQKKER QPRFAFMTKS EVDHLEDGYR WRKYGQKAVK NSPYPRSYYR  180
CTTQKCPVKK RVERSFQDPS IVITTYEGQH NHHVPATLRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-30145216778Probable WRKY transcription factor 4
2lex_A2e-30145216778Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM8231600.0KM823160.1 Salvia miltiorrhiza WRKY protein (WRKY37) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085274.13e-90probable WRKY transcription factor 71
SwissprotQ8VWJ27e-55WRK28_ARATH; WRKY transcription factor 28
TrEMBLA0A0D5YAF01e-161A0A0D5YAF0_SALMI; WRKY protein
STRINGXP_002519733.15e-73(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14852475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.14e-50WRKY DNA-binding protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kim SH, et al.
    Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis.
    Mol. Cells, 2014. 37(11): p. 833-40
    [PMID:25358503]
  4. Zhao L, et al.
    KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535
    [PMID:29288215]