PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00005131-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 212aa    MW: 22505.2 Da    PI: 4.7793
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00005131-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.54e-193686155
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  SMil_00005131-RA_Salv 36 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 86
                           68*****998.**********843...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.2E-133686IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-213795IPR016177DNA-binding domain
SMARTSM003801.6E-3537100IPR001471AP2/ERF domain
PROSITE profilePS5103223.3673794IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-323795IPR001471AP2/ERF domain
PRINTSPR003672.0E-103849IPR001471AP2/ERF domain
CDDcd000187.41E-313896No hitNo description
PRINTSPR003672.0E-106076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MNADQHTSLA SSSPPPESGG RIKRSRGGAA TNSKHPVYRG VRMRSWGKWV SEIREPRKKS  60
RIWLGTFPTP EMAARAHDVA ALSIKGASAA LNFPDLAAAL PRPASLSPRD VQAAAAKAAA  120
MEKFDAPPPS SLFSSSSLSS LVSCLDLSAA AEEEELSEIV ELPSLGPCFE GDEFVYVENA  180
VVDGWFDAPP PWGGGDGDAG ISSCFETLLW DY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-192694372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011091185.16e-75ethylene-responsive transcription factor TINY
SwissprotQ9LYD33e-60DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A4D8YL533e-93A0A4D8YL53_SALSN; EREBP-like factor
STRINGXP_004291182.11e-69(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.13e-38ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]