PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00005124-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 700aa    MW: 78851.1 Da    PI: 4.4986
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00005124-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.85.9e-14542585146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            r rW++++ el+++av+q+G++ ++ Ia+ ++ gR+++q+++++ k
  SMil_00005124-RA_Salv 542 RVRWSKQDTELFYEAVQQFGTD-FSMIAQLFP-GRSREQIRNKYKK 585
                            78********************.*********.***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159631.3E-25538619No hitNo description
Gene3DG3DSA:1.10.10.602.8E-9540585IPR009057Homeodomain-like
PROSITE profilePS5129310.884540588IPR017884SANT domain
SMARTSM007174.8E-12541589IPR001005SANT/Myb domain
CDDcd001677.37E-10544585No hitNo description
SuperFamilySSF466893.14E-12544592IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MADDFDPFDD IFGDEPVKNA RVVGKFRPKP KFQPQRKVSA KSSVATSQSV QTVHSAPLDS  60
SEPIHTVKPL EQCSNVLPTD NAKQAGQTFD SAPRELSQPI MNAELLEHVI MVKDRWMFKY  120
WFFPHVLSGS DAVPNDKSDS TNTCKVADVT KDSDVAAEVD ALAAGERIVS SADVHDDIDG  180
RGVIEGMDSI NMTELTTKSE QGTGKFQPGS NLKMQKNMYE PSNSTSYSLD FQAGSLQPDS  240
AENNFIPTSQ NDDAVDLSSP GFTHTLPTES TSELPLDEES MNLKEVPQSD SFTHMEGLPE  300
IPAKLASRRA KTRNSKTNAA SDPNLHQQKP STSSQENGAS RSLRPRKRDT SFCELVDEDG  360
DETLASGENC EERPFSSAID EENLNNEQPQ VESESQKKNS KRKSKKTEND KDKPPRKNKK  420
AKEASEQETR AKKKKFSHST QRRRILDKNL LNIPEEEFDP REVSFRDLIL LAEHREKQMK  480
TGQATAPATH QSTGNSDYNN EPAGQYYNDP AGQYNNDEED GPIAEDTTEY FNYQSRMEKT  540
PRVRWSKQDT ELFYEAVQQF GTDFSMIAQL FPGRSREQIR NKYKKEERQY PLRLREALTN  600
RGKDLSYFGK VIENLNKIRE QEELEDCTST EGGPDEEASD ADDDGGKHEH VEEEENGDAA  660
NNFTEVQTAA KPETEKEEVV VEEEENEEDE MLLWSQYKSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5n9g_C2e-1351862356158Transcription factor TFIIIB component B'' homolog
5n9g_H2e-1351862356158Transcription factor TFIIIB component B'' homolog
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1401419RKSKKTENDKDKPPRKNKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076930.10.0transcription factor TFIIIB component B''-like
TrEMBLA0A4D9BY880.0A0A4D9BY88_SALSN; Transcription factor TFIIIB component B
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59022326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.12e-35MYB_related family protein