PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00005097-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 280aa    MW: 31148.4 Da    PI: 5.4272
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00005097-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.63.5e-11142189355
                            HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            + h ++Er+RR+++++ f  L +++P +     kKl+Ka+ Le A++++ksL+
  SMil_00005097-RA_Salv 142 QDHLMAERKRREDLRHLFIALSKVVPGL-----KKLDKASLLEDAINHLKSLE 189
                            56999***********************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.085139188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-9142189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-13143200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.78E-11144192No hitNo description
SuperFamilySSF474592.49E-15144201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-12145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00371229270No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
LILGPMEILE DDFFYLNPFL AEIYSNCSNS GSSQTSDHGG AADQLRMSST SWINSLNGRE  60
MAMPSSSIMA AAVEAPRLIS FENERFSSFS PTNADHRSTD CNNLTPQIIS FSSSTKDDDD  120
DGDFGGKRER ASTATRTPLQ AQDHLMAERK RREDLRHLFI ALSKVVPGLK KLDKASLLED  180
AINHLKSLEE RVNVLEKEAM MSPREDISNS GCESVPVEIS ARVREKHVLI KMCCKKQMGL  240
MSRIPCEMEK LHLNVVDIRI MPFGQAALDV TILAENKPSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147152ERKRRE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2574480.0KP257448.1 Salvia miltiorrhiza clone 15 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0H3Y8S30.0A0A0H3Y8S3_SALMI; Basic helix-loop-helix transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA88641628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-31bHLH family protein