PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00005093-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | ERF | ||||||||
Protein Properties | Length: 172aa MW: 18997.3 Da PI: 4.3851 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.6 | 6.3e-18 | 15 | 64 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr++k +grWv+eIr+p gk++r++lg+f+t+e+Aa+a++ + +l+g SMil_00005093-RA_Salv 15 RYIGVRRRK-WGRWVSEIREP---GKKTRIWLGSFDTPEMAAAAYDVSAWYLRG 64 699***998.**********8...557*******************99888877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.89E-29 | 14 | 74 | No hit | No description |
SMART | SM00380 | 3.1E-35 | 15 | 78 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.3E-12 | 15 | 64 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-29 | 15 | 73 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.392 | 15 | 72 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.36E-22 | 15 | 73 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.1E-8 | 16 | 27 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-8 | 38 | 54 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MIKQDKNEGA GTGARYIGVR RRKWGRWVSE IREPGKKTRI WLGSFDTPEM AAAAYDVSAW 60 YLRGPDARIN FPELVESLPK PASADADDIR QAAQLAAMRL GGVEQNVGSG GEAVPARVKL 120 SPSDIQAINE APLDSPKMWM ELAGPSGVEE PVSYGEIEME EWDETETYSI WD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-15 | 13 | 77 | 3 | 68 | ATERF1 |
3gcc_A | 4e-15 | 13 | 77 | 3 | 68 | ATERF1 |
5wx9_A | 2e-14 | 9 | 73 | 5 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00227 | DAP | Transfer from AT1G71450 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011098959.1 | 1e-65 | ethylene-responsive transcription factor ERF022 | ||||
TrEMBL | A0A4D9A8A4 | 7e-98 | A0A4D9A8A4_SALSN; EREBP-like factor | ||||
STRING | POPTR_0013s10340.1 | 4e-61 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71450.1 | 1e-48 | ERF family protein |