 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
SMil_00005086-RA_Salv |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
| Family |
SRS |
| Protein Properties |
Length: 393aa MW: 40316.6 Da PI: 8.2719 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| SMil_00005086-RA_Salv | genome | NDCTCM | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 218.2 | 1.7e-67 | 182 | 341 | 3 | 153 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstk 90
+gt++CqdCGnqakkdC h+RCRtCCksrg+dC+thvkstWvpaa+rrerq + +++a +s++++ +k++r +++++++s+t+
SMil_00005086-RA_Salv 182 VGTTTCQDCGNQAKKDCPHRRCRTCCKSRGYDCSTHVKSTWVPAARRRERQLMG-GNTATAGSSQSTSGTKKPRLGGASQTTTASHTS 268
6899*********************************************96655.55677788889999******999********** PP
DUF702 91 lssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
+s+++++++++t+s lP +v+++avf+cvrv++vddge+e+aYq++v+igGh+fkG+LydqG e
SMil_00005086-RA_Salv 269 TSNTTPPRSFDTTSshldaslkesLPGQVRAPAVFKCVRVTAVDDGEDEFAYQAVVKIGGHIFKGFLYDQGFE 341
************999********************************************************87 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 393 aa
Download sequence Send
to blast |
MKKAKATAAN SAVVATTRRL PSDSSGAFAE WVASSSSAGD LSLGFNAGPS ATNSAAAAGG 60
LWPASAAAAT RHINCGLPPE FYFVAPASSF HHAEAAATAA TTINFDPHSL NASNAIGVGV 120
IPLLTASPCI AAADEDVINS TSRSRGAGMQ LWQQLPDPYL KKPLNSNIDH ANLGGGGASS 180
SVGTTTCQDC GNQAKKDCPH RRCRTCCKSR GYDCSTHVKS TWVPAARRRE RQLMGGNTAT 240
AGSSQSTSGT KKPRLGGASQ TTTASHTSTS NTTPPRSFDT TSSHLDASLK ESLPGQVRAP 300
AVFKCVRVTA VDDGEDEFAY QAVVKIGGHI FKGFLYDQGF EGRESFPDIS ELHLGGLGGG 360
GRNGAALDPT SDMYAASSGG GLLGGSTYGN QIN
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK355643 | 8e-38 | AK355643.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1023M22. |
| GenBank | AK363554 | 8e-38 | AK363554.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2016K14. |
| GenBank | HG670306 | 8e-38 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT5G12330.2 | 6e-69 | Lateral root primordium (LRP) protein-related |
