PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00005073-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 264aa    MW: 29836.6 Da    PI: 9.6557
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00005073-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.41e-154390148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g W++eEde+l ++    G g+W+ Iar  g+ R++k+c++rw +yl
  SMil_00005073-RA_Salv 43 KGLWSPEEDEKLMNYMVTNGQGCWSDIARNAGLQRCGKSCRLRWINYL 90
                           678*******************************************97 PP
2Myb_DNA-binding50.25.7e-1696139146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            rg+++++E+ l+++++  lG++ W+ Ia++++ gRt++++k++w++
  SMil_00005073-RA_Salv  96 RGAFSPQEEHLIIHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 139
                            89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.0923890IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-233893IPR009057Homeodomain-like
SuperFamilySSF466897.76E-2941137IPR009057Homeodomain-like
SMARTSM007171.9E-114292IPR001005SANT/Myb domain
PfamPF002494.3E-144390IPR001005SANT/Myb domain
CDDcd001676.46E-94690No hitNo description
PROSITE profilePS5129425.01791145IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2594146IPR009057Homeodomain-like
SMARTSM007173.2E-1495143IPR001005SANT/Myb domain
PfamPF002496.6E-1596139IPR001005SANT/Myb domain
CDDcd001675.72E-998138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
LGEERSRIYH QPRMRKPEHN NVMMVKDKVN NNGGAIMKAK LRKGLWSPEE DEKLMNYMVT  60
NGQGCWSDIA RNAGLQRCGK SCRLRWINYL RPDLKRGAFS PQEEHLIIHL HSILGNRWSQ  120
IAARLPGRTD NEIKNFWNST IKKRLKNAGN TTTSSSPNNS DSSDHQLKAS VGGGGTVFMQ  180
EYEVGGVCMD SSSSSCSSMA TQFGNPFNPN HQHHFNNNNI FDVNGVVPMF NLQHEVGGGV  240
LGDYGGWNPM SWHWKMTFLS LDWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27411455108B-MYB
1h8a_C2e-273614520128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as molecular switch in the NAC012/SND1-mediated transcriptional network regulating secondary wall biosynthesis. Is directly activated by NAC012/SND1 and its close homologs, including NAC043/NST1, NAC066/NST2, NAC101/VND6 and NAC030/VND7. Is required for functional expression of a number of secondary wall-associated transcription factors and secondary wall biosynthetic genes involved in cellulose, xylan and lignin synthesis. Functions redundantly with MYB46 in the transcriptional regulatory cascade leading to secondary wall formation in fibers and vessels (PubMed:19808805). Transcription activator that binds to the DNA consensus sequence 5'-ACC[AT]A[AC][TC]-3', designated as the secondary wall MYB-responsive element (SMRE). Regulates directly numerous transcription factors and a number of genes involved in secondary wall biosynthesis that contain SMRE elements in their promoters (PubMed:22197883). {ECO:0000269|PubMed:19808805, ECO:0000269|PubMed:22197883}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00336DAPTransfer from AT3G08500Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0594480.0KF059448.1 Salvia miltiorrhiza MYB-related transcription factor (MYB94) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027162565.11e-88transcription factor MYB83
SwissprotQ9C6U15e-70MYB83_ARATH; Transcription factor MYB83
TrEMBLA0A059PRF61e-172A0A059PRF6_SALMI; MYB-related transcription factor
STRINGPOPTR_0009s06630.11e-81(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.12e-70myb domain protein 83
Publications ? help Back to Top
  1. Vargas L, et al.
    Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants.
    Biotechnol Biofuels, 2016. 9: p. 139
    [PMID:27390589]
  2. Piya S,Kihm C,Rice JH,Baum TJ,Hewezi T
    Cooperative Regulatory Functions of miR858 and MYB83 during Cyst Nematode Parasitism.
    Plant Physiol., 2017. 174(3): p. 1897-1912
    [PMID:28512179]