PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00005062-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 329aa    MW: 36583.6 Da    PI: 6.8828
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00005062-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.5e-20149199256
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                             y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++a+ kl+ge
  SMil_00005062-RA_Salv 149 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEDAALAYDKAAYKLRGE 199
                            59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.92E-33148208No hitNo description
Gene3DG3DSA:3.30.730.102.6E-32149207IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-23149207IPR016177DNA-binding domain
SMARTSM003809.0E-38149212IPR001471AP2/ERF domain
PROSITE profilePS5103223.064149206IPR001471AP2/ERF domain
PRINTSPR003675.5E-11150161IPR001471AP2/ERF domain
PfamPF008471.0E-13150199IPR001471AP2/ERF domain
PRINTSPR003675.5E-11172188IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0045595Biological Processregulation of cell differentiation
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MAAALDFYGC SSFSRDPLRE ELMQALEPFM KSASSSDPFL SPLSPSTSSS DSNVYAGFGS  60
IPSRTQPISP GFSNFSEMVN EETLSNTVGL NQLTPYQIYQ IQAQFHLQQQ QQQQQQHNFR  120
LQRHHNSSFL GPKPVAMKQA GTPSKPMKLY RGVRQRHWGK WVAEIRLPKN RTRLWLGTFD  180
TAEDAALAYD KAAYKLRGEF ARLNFPHLRH QLCRDSSDFK PLQSSVDAKL QAICQNLAAN  240
SQKQKQGSSR KSGAAPDQDP QTSKAEDVKV EAATPSSSAS PSSSPSDETS SSSSSPESDV  300
TFVEPLFDDE FDNFLLQKYP SVEIDWASL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-21148206160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00026PBMTransfer from AT1G78080Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097593.11e-129ethylene-responsive transcription factor RAP2-4
TrEMBLA0A4D9ALK31e-133A0A4D9ALK3_SALSN; EREBP-like factor
STRINGMigut.L00108.1.p1e-112(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16102471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.18e-48ERF family protein