PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00005059-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | NF-YB | ||||||||
Protein Properties | Length: 137aa MW: 15169 Da PI: 9.834 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 106.1 | 2.3e-33 | 1 | 94 | 1 | 94 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 +++q+r++ ianvsrimkk lP na isk + + + + asdkcqrekrktingddllwa++tlGf++yv+plk yl+ y SMil_00005059-RA_Salv 1 MKDQERVVAIANVSRIMKKSLPPNANISKGSERNSAGMRVGVHKLRDGGASDKCQREKRKTINGDDLLWAMTTLGFQNYVDPLKDYLTTY 90 589****************************999999999999999******************************************** PP NF-YB 91 rele 94 r++ SMil_00005059-RA_Salv 91 RDTS 94 *975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.5E-26 | 2 | 95 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.49E-18 | 5 | 93 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.4E-4 | 50 | 71 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 8.6E-9 | 54 | 72 | No hit | No description |
PRINTS | PR00615 | 8.6E-9 | 73 | 91 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MKDQERVVAI ANVSRIMKKS LPPNANISKG SERNSAGMRV GVHKLRDGGA SDKCQREKRK 60 TINGDDLLWA MTTLGFQNYV DPLKDYLTTY RDTSSPIHDK TKIATANPSF LQGFTSDAGG 120 VVIEFATSSW CXHFINL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 5e-27 | 1 | 92 | 1 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 5e-27 | 1 | 92 | 1 | 92 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}. | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021887454.1 | 3e-34 | nuclear transcription factor Y subunit B-1-like | ||||
Swissprot | O23310 | 3e-32 | NFYB3_ARATH; Nuclear transcription factor Y subunit B-3 | ||||
Swissprot | Q75IZ7 | 6e-32 | NFYB8_ORYSJ; Nuclear transcription factor Y subunit B-8 | ||||
TrEMBL | A0A4D9AZ56 | 6e-34 | A0A4D9AZ56_SALSN; Uncharacterized protein | ||||
STRING | evm.model.supercontig_196.1 | 1e-33 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA111 | 24 | 356 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 1e-34 | nuclear factor Y, subunit B3 |
Publications ? help Back to Top | |||
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