PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00005058-RA_Salv
Common NameWRKY19
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family WRKY
Protein Properties Length: 221aa    MW: 25422.9 Da    PI: 9.1525
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00005058-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.62.2e-32144202159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver a+dp++v++tYeg+H h+
  SMil_00005058-RA_Salv 144 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLADDPRMVITTYEGRHIHS 202
                            59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-33129202IPR003657WRKY domain
SuperFamilySSF1182901.1E-28136203IPR003657WRKY domain
PROSITE profilePS5081129.471139204IPR003657WRKY domain
SMARTSM007744.3E-37144203IPR003657WRKY domain
PfamPF031062.0E-25145201IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MSSQAMLNQS LFEEQEMIIS SQLGIFPFHT NLSSSLPLLG FNQPLKTLSA DSPLITLSDH  60
STLTKQKEDF TPHFSGLPHL LSLQRSAASN YWAWGELSDC MSMKRSGGED HLGVSAMKMK  120
KIKARRKVRE PRFCFKTMSD VDVLDDGYKW RKYGQKVVKN TQHPRSYYRC TQDNCRVKKR  180
VERLADDPRM VITTYEGRHI HSPSHDEDDS QASAQLTNFF W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-27135201874Probable WRKY transcription factor 4
2lex_A3e-27135201874Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM8231420.0KM823142.1 Salvia miltiorrhiza WRKY protein (WRKY19) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100913.21e-130probable WRKY transcription factor 13
TrEMBLA0A0D5YA091e-166A0A0D5YA09_SALMI; WRKY protein
STRINGVIT_07s0031g01840.t011e-110(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103762126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.12e-55WRKY DNA-binding protein 13