PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00005037-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 282aa MW: 32090.4 Da PI: 8.7534 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.7 | 1.5e-28 | 64 | 113 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +i+n + rqvtfskRr g++KKAeELSvLCda+va+iifsstgkl+ey+s SMil_00005037-RA_Salv 64 KIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEYAS 113 69**********************************************86 PP | |||||||
2 | K-box | 49.9 | 1.3e-17 | 146 | 225 | 19 | 98 |
K-box 19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++++L +ei + +++R++ Ge+L+ Ls++eLqqLe+ Le +l+++ +kK e ++++i lq k k+l een++Lr+++ SMil_00005037-RA_Salv 146 SNHSRLSQEIAERSHQLRRMRGEELQGLSIEELQQLEKSLEAGLSRVIEKKGEKIMKEITLLQDKGKQLMEENERLRQQV 225 56789999999999****************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.543 | 55 | 115 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.1E-40 | 55 | 114 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.88E-39 | 56 | 124 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 57 | 111 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.23E-31 | 57 | 126 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-27 | 57 | 77 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.7E-26 | 64 | 111 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-27 | 77 | 92 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-27 | 92 | 113 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 13.409 | 141 | 231 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.0E-15 | 146 | 225 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009266 | Biological Process | response to temperature stimulus | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048438 | Biological Process | floral whorl development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000900 | Molecular Function | translation repressor activity, nucleic acid binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
LGSPLNWGKC HLFRLSFSLF PRSGHARYRN FVSPPHAVYF YSRQTAIYII FGKIMAREKI 60 QIRKIDNATA RQVTFSKRRR GLFKKAEELS VLCDADVALI IFSSTGKLFE YASSSMKEIL 120 ERHKLHAKNL DKLEQPSLEL QLVEDSNHSR LSQEIAERSH QLRRMRGEEL QGLSIEELQQ 180 LEKSLEAGLS RVIEKKGEKI MKEITLLQDK GKQLMEENER LRQQVVNISS DGQRNTVAAE 240 SDNIVYDEGQ SSESVNACNS IGPPQDYDSS DTSLKLGLPY SG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 6e-21 | 55 | 123 | 1 | 69 | MEF2C |
5f28_B | 6e-21 | 55 | 123 | 1 | 69 | MEF2C |
5f28_C | 6e-21 | 55 | 123 | 1 | 69 | MEF2C |
5f28_D | 6e-21 | 55 | 123 | 1 | 69 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that inhibit floral transition in the autonomous flowering pathway, independent of photoperiod and temperature. Acts in a dosage-dependent manner. Together with AGL24 and AP1, controls the identity of the floral meristem and regulates expression of class B, C and E genes. Promotes EFM expression to suppress flowering (PubMed:25132385). {ECO:0000269|PubMed:16679456, ECO:0000269|PubMed:18694458, ECO:0000269|PubMed:19656343, ECO:0000269|PubMed:25132385}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00272 | DAP | Transfer from AT2G22540 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the floral homeotic genes AP1 and SEP3 in emerging floral meristems. Up-regulated by HUA2. {ECO:0000269|PubMed:15659097, ECO:0000269|PubMed:17428825, ECO:0000269|PubMed:18694458}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011097479.1 | 1e-141 | MADS-box protein JOINTLESS | ||||
Swissprot | Q9FVC1 | 1e-115 | SVP_ARATH; MADS-box protein SVP | ||||
TrEMBL | A0A2G9G7L1 | 1e-141 | A0A2G9G7L1_9LAMI; MADS box transcription factor | ||||
STRING | cassava4.1_015543m | 1e-129 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA938 | 23 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 1e-110 | MIKC_MADS family protein |