PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00004983-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

NF-YA

Protein Properties

Length: 299aa MW: 33432.9 Da PI: 8.8776

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00004983-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	99.1	4.6e-31	168	222	3	58
CBFB_NFYA 3 plYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p++VNaKQy++Il+RRq+Rakle+++k+ +++rkpylheSRh+hAlrR+RgsgGrF SMil_00004983-RA_Salv 168 PMFVNAKQYHAILRRRQTRAKLEAQNKV-ARTRKPYLHESRHHHALRRARGSGGRF 222 99************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	4.9E-34	164	225	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	34.602	165	225	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	6.6E-24	168	190	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	7.3E-27	168	222	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	170	190	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	6.6E-24	199	222	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MRSLSMKDSD RTSADSFPTL FGSRMPMWFS AKQPEIPVSK SVATELEGTK EHDFYHLKLS 60 DSHYQEQDSS STLSTDQSHS HHEGSTSAGS DVQMKNVSFQ PEYPSHHQVQ MEHNQSSDWA 120 SYSMAAVAPY FGGRMTAAYD PNAAIYPQMA GVGQARAVLP LDHSQGIPMF VNAKQYHAIL 180 RRRQTRAKLE AQNKVARTRK PYLHESRHHH ALRRARGSGG RFLNTKKSDP TAQESEVQHS 240 EGSSSWDTST TSGSDVSYIF NNGDFFQQPR MGTQSHMGAR NDMLLLSMDR CGAQIRSTT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-21	168	229	4	65	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011101386.1	1e-105	nuclear transcription factor Y subunit A-5
Refseq	XP_011101465.1	1e-105	nuclear transcription factor Y subunit A-5
TrEMBL	A0A4D8XW28	1e-139	A0A4D8XW28_SALSN; Uncharacterized protein
STRING	Migut.E01576.1.p	6e-81	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4800	20	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17590.4	2e-39	nuclear factor Y, subunit A8