PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00004890-RA_Salv

Common Name

MYB100

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

MYB

Protein Properties

Length: 300aa MW: 33307.6 Da PI: 7.4642

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00004890-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.9	3.1e-15	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l++ ++++G+ +W + +++ g++R++k+c++rw++yl SMil_00004890-RA_Salv 14 KGPWSPEEDAKLKEFINKYGPAgNWIALPQKAGLKRCGKSCRLRWLNYL 62 79****************77***********************97 PP
2	Myb_DNA-binding	37.3	6.3e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ eEd ++ + + G++ W+ Ia+ ++ gRt++++k++w++ SMil_00004890-RA_Salv 69 GEFSDEEDGIICTLYATIGSR-WSVIASQLP-GRTDNDIKNYWNT 111 789****************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	20.871	9	66	IPR017930	Myb domain
SuperFamily	SSF46689	1.96E-26	11	109	IPR009057	Homeodomain-like
SMART	SM00717	1.7E-12	13	64	IPR001005	SANT/Myb domain
Pfam	PF00249	2.2E-14	14	62	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.2E-24	15	69	IPR009057	Homeodomain-like
CDD	cd00167	6.45E-10	16	62	No hit	No description
SMART	SM00717	5.0E-11	67	115	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	15.389	67	117	IPR017930	Myb domain
Pfam	PF00249	1.5E-10	69	111	IPR001005	SANT/Myb domain
CDD	cd00167	7.78E-8	70	113	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.4E-23	70	117	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKEFIN KYGPAGNWIA LPQKAGLKRC GKSCRLRWLN 60 YLRPNIKHGE FSDEEDGIIC TLYATIGSRW SVIASQLPGR TDNDIKNYWN TKLKKKILGL 120 NQPKFQPPFS SLSNLSHLYT SFFDQPRKPL PPDSINFVAP QNSTILYSNT AQQHEEFHAY 180 YPIKDNMLVF GQNDAASCSS SDGSCSQISY GAKDRVVKNE QIGFLHGFID NPNSLALEDP 240 LGSIFDHHKQ INIGVLENSQ LQYDLEEVKQ LITSGGGGGG GGGLLFGDES KAEAMGMYYF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-26	14	117	7	108	B-MYB
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF059454	0.0	KF059454.1 Salvia miltiorrhiza MYB-related transcription factor (MYB100) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011089189.1	1e-104	transcription factor RAX2
TrEMBL	A0A059PRX1	0.0	A0A059PRX1_SALMI; MYB-related transcription factor
STRING	cassava4.1_030463m	3e-94	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	3e-75	myb domain protein 36

Publications ? help Back to Top
Li C,Lu S Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza. BMC Genomics, 2014. 15: p. 277 [PMID:24725266]