PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00004841-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 148aa    MW: 15937.7 Da    PI: 9.0056
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00004841-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP270.14e-2275125256
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                            +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa+a+++a+++++g+
  SMil_00004841-RA_Salv  75 KYRGVRRRP-WGKWAAEIRDPY----KaARVWLGTFDTAEDAARAYDEAALRFRGN 125
                            8********.**********76....35*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-3374133IPR001471AP2/ERF domain
SMARTSM003801.6E-3675138IPR001471AP2/ERF domain
SuperFamilySSF541715.23E-2475134IPR016177DNA-binding domain
PfamPF008478.4E-1575124IPR001471AP2/ERF domain
PROSITE profilePS5103225.76575132IPR001471AP2/ERF domain
CDDcd000181.07E-3275134No hitNo description
PRINTSPR003671.8E-127687IPR001471AP2/ERF domain
PRINTSPR003671.8E-1298114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MSVMVSALAH VVAGDVGVGE EAVACNHYAD FPFSNTPPSN SSEAGPSMIT STQETAAVYS  60
YSQTPSASAS GASRKYRGVR RRPWGKWAAE IRDPYKAARV WLGTFDTAED AARAYDEAAL  120
RFRGNKAKLN FPENVTLIHN NAGRQPLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2474136467ATERF1
3gcc_A2e-2474136467ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090449.16e-44ethylene-responsive transcription factor ABR1-like
TrEMBLA0A4D9AL694e-56A0A4D9AL69_SALSN; EREBP-like factor
STRINGXP_006427894.15e-43(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.19e-29ethylene response factor 110