PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00004833-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | ERF | ||||||||
Protein Properties | Length: 178aa MW: 19670.1 Da PI: 10.8624 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.2 | 2e-18 | 86 | 136 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrd k +r++lg+f taeeAa a+ +a++++ g SMil_00004833-RA_Salv 86 DYRGVRRRP-WGKYAAEIRDS---SrKGARVWLGTFETAEEAALAYNKAALRIIG 136 69*******.**********3...2234***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.524 | 86 | 144 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-35 | 86 | 150 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.1E-13 | 86 | 136 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.2E-30 | 86 | 145 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.75E-25 | 87 | 144 | No hit | No description |
SuperFamily | SSF54171 | 2.62E-22 | 87 | 145 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.7E-11 | 87 | 98 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-11 | 110 | 126 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MPTSAPPPTR SSSAPTAPPP NLETAIAALE ISQRGNHRRC GNRRERACRC SSYRRADRFS 60 PSAPSGVVLA TGARVSSEPP WLSNRDYRGV RRRPWGKYAA EIRDSSRKGA RVWLGTFETA 120 EEAALAYNKA ALRIIGPKTH LNFPLESVAK ASANHGAVGR DHHWKRAADL DEYELERL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-25 | 85 | 145 | 4 | 64 | ATERF1 |
3gcc_A | 5e-25 | 85 | 145 | 4 | 64 | ATERF1 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11237 | 18 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 2e-20 | ERF family protein |