PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00004827-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family B3
Protein Properties Length: 232aa    MW: 26400.1 Da    PI: 7.9505
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00004827-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.71.3e-10351121595
                            -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                     B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                             l +p kf++eh  ++ee+  + l+ + g sW  k+  + ++++++l +GWk+Fv+++ L   +   F ++g ++f  ++ 
  SMil_00004827-RA_Salv  35 ELQIPTKFFNEHLASEEETERVALRGPCG-SWAAKM--EWRDDGVYLVQGWKDFVESHSLGRAEWAEFLYNGGMSFDVKIY 112
                            689*********66667777899998877.8*****..66666789999*********************99999955555 PP
2B349.86.2e-16140231197
                            EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                            f+ v++ ++v+ ++ + ++k f ++h +    + +++ l+d++g sW v+  +  +sg+  l +GWk F +a+ +k g +++F+l++ 
  SMil_00004827-RA_Salv 140 FKHVMKGHNVGHKCTMLISKAFSRKHlS-M--SRQEMLLRDSDGVSWAVTA-VVVSSGHLSLCGGWKAFTDAHSIKKGNTCIFELVE- 222
                            5667778899999*************53.3..3348**************9.6899999*************************986. PP

                            SEE..EEEEE CS
                     B3  88 sefelvvkvf 97 
                             ++ + v+++
  SMil_00004827-RA_Salv 223 -QKVMQVHIL 231
                            .444577766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.12E-1319115IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-1220113IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.55921115IPR003340B3 DNA binding domain
SMARTSM010190.008229115IPR003340B3 DNA binding domain
PfamPF023622.4E-734113IPR003340B3 DNA binding domain
SuperFamilySSF1019365.89E-22133232IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-20133232IPR015300DNA-binding pseudobarrel domain
CDDcd100172.14E-17138232No hitNo description
SMARTSM010194.1E-7140232IPR003340B3 DNA binding domain
PROSITE profilePS5086313.578140232IPR003340B3 DNA binding domain
PfamPF023628.3E-14140231IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
LSIGMEKSKV GEEKWGDPDT RHSFYQIMWF QNLTELQIPT KFFNEHLASE EETERVALRG  60
PCGSWAAKME WRDDGVYLVQ GWKDFVESHS LGRAEWAEFL YNGGMSFDVK IYGCNGWLKS  120
YKKAASEEGT PSFTSSFPFF KHVMKGHNVG HKCTMLISKA FSRKHLSMSR QEMLLRDSDG  180
VSWAVTAVVV SSGHLSLCGG WKAFTDAHSI KKGNTCIFEL VEQKVMQVHI LR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088316.13e-80B3 domain-containing protein Os11g0197600-like
RefseqXP_020551469.13e-80B3 domain-containing protein Os11g0197600-like
RefseqXP_020551470.13e-80B3 domain-containing protein Os11g0197600-like
RefseqXP_020551471.13e-80B3 domain-containing protein Os11g0197600-like
RefseqXP_020551472.13e-80B3 domain-containing protein Os11g0197600-like
RefseqXP_020551473.13e-80B3 domain-containing protein Os11g0197600-like
TrEMBLA0A4D9C4U11e-114A0A4D9C4U1_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37792244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.12e-17B3 family protein