PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00004694-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 715aa    MW: 80528 Da    PI: 8.9409
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00004694-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.51.4e-08590637448
                            S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                            WT  E ++l+d+v+++G g+W++I +       +Rt  ++k++w+++l
  SMil_00004694-RA_Salv 590 WTIAEVKKLIDGVAEYGVGRWSRIKKIYFpasAHRTSVDLKDKWRNLL 637
                            9***********************996555****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.697582641IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.5E-13582640IPR009057Homeodomain-like
SuperFamilySSF466896.03E-16584644IPR009057Homeodomain-like
SMARTSM007174.6E-9586639IPR001005SANT/Myb domain
PfamPF139216.0E-7590640No hitNo description
CDDcd116602.20E-20590638No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MIDLDANVFL QQNKENSPYP QQGVVVTLAN NNCASPRRTP SNIFHYNFVK SFSIPPNKCY  60
ILSHFPTNLL FPTISQNTLK RTTRPAEALD LQNQRGVEYM CNNCQFMRRC ANVMGNGPPT  120
IEFEDGTVDV EHLLVEPQDG HVSVDSVMCF NEKISEKAID IREVSRTFGV TSAGTAHEGG  180
DILNRDVLDL HTEDDSGYFR LQNDFCSMGE EYLLGVGFAE SITDLEYVSS ECLQTSVSDS  240
PVLTCAGIDS PWKSDIFRIM EVPECQNEVV DLKNSEFGEI PRPQHESENL TEKKPLKSPK  300
ENIGKMFSGP KNEKSDEYVQ TGQSSESNRV HRQDESITLL SAESPSDALP VLKRSRKPTK  360
RYIDEVVDPI SRHSKRRREV SSSAFREKSV GVKDNKKCHM GSKAIKLPAE ESAVKAIQVP  420
FGSLVRKECP ESPAYNLARS SDRRILMNKP KDYCVASENQ KKRDECTPVV HQIKWTDGIP  480
AASQKKKDDN VSGAHSMKKD QYITNIHSTK RNDSVTAASQ KKKEKDVNGA HLVKSDDRLT  540
APSQKTREQT GSPKKKDECT TAICQRKRED PPTVESPEEV SGRRKHHRLW TIAEVKKLID  600
GVAEYGVGRW SRIKKIYFPA SAHRTSVDLK DKWRNLLKAS GLQGQHNEQG EKKRNVAWRP  660
LPKSILRRVC ELAAMHPYPK GGKPKMAHIR HVSPDKSTDI TLSDYRRILR SINGS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1581588GRRKHHRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094643.10.0uncharacterized protein LOC105174291 isoform X1
TrEMBLA0A4D8ZY390.0A0A4D8ZY39_SALSN; Uncharacterized protein
STRINGMigut.J00525.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91551723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.25e-25TRF-like 6