PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00004649-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | ERF | ||||||||
Protein Properties | Length: 259aa MW: 29014.1 Da PI: 6.6666 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.5 | 7.1e-18 | 29 | 79 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++ GVr+++ +g+WvAeI+ + ++ r +lg+f+taeeAa a+++a+ l+g SMil_00004649-RA_Salv 29 SKFVGVRQRP-SGKWVAEIKNTT---QKIRMWLGTFDTAEEAALAYDEAACLLRG 79 79********.7******99932...36**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.83E-32 | 29 | 86 | No hit | No description |
Pfam | PF00847 | 3.4E-13 | 29 | 79 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-19 | 29 | 87 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.6E-34 | 30 | 93 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.979 | 30 | 87 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-27 | 30 | 87 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.9E-8 | 31 | 42 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.9E-8 | 53 | 69 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000302 | Biological Process | response to reactive oxygen species | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0035865 | Biological Process | cellular response to potassium ion | ||||
GO:0048528 | Biological Process | post-embryonic root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MELHFHSSSS TNSNNHTTYK STNRSPSKSK FVGVRQRPSG KWVAEIKNTT QKIRMWLGTF 60 DTAEEAALAY DEAACLLRGS NTRTNFLNTM PCNPALSLKI KNLLNQKRSQ NKAISPPTSA 120 TRYTDQDVNG KAIDTTTSSS SSSQYTTNES FSSNQIQMEG SLDFTSNPCE DAYKPDFSHF 180 TPGYEMITPH FNLDKAADAP RRGANEAPSF SDFERMKVER QISASLYAMN GINEYWDTIN 240 DSNDALWDIQ TLCQMFCPS |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00521 | DAP | Transfer from AT5G19790 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011089231.1 | 1e-101 | ethylene-responsive transcription factor RAP2-11-like | ||||
TrEMBL | A0A4D8Z863 | 1e-130 | A0A4D8Z863_SALSN; EREBP-like factor | ||||
TrEMBL | A0A4D9A4W9 | 1e-130 | A0A4D9A4W9_SALSN; EREBP-like factor | ||||
STRING | Migut.D02554.1.p | 5e-74 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2018 | 22 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 1e-40 | related to AP2 11 |