PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00004577-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MYB | ||||||||
Protein Properties | Length: 278aa MW: 29813.3 Da PI: 8.8958 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.3 | 2.6e-11 | 10 | 56 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 W+ e d+++ +a++ ++ + +W++Ia+ + g++ +++k+++q + SMil_00004577-RA_Salv 10 VWSREQDKQFEKAIAAYPENssdRWEKIAADVC-GKSVEEIKHHYQLL 56 7********************************.***********965 PP | |||||||
2 | Myb_DNA-binding | 42.1 | 2e-13 | 117 | 161 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + ++G+g+W++I+r + +Rt+ q+ s+ qky SMil_00004577-RA_Salv 117 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 161 6*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 8.897 | 6 | 60 | IPR017884 | SANT domain |
SMART | SM00717 | 3.4E-10 | 7 | 59 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.93E-12 | 9 | 65 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.4E-9 | 10 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-4 | 11 | 56 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.77E-10 | 11 | 57 | No hit | No description |
PROSITE profile | PS51294 | 17.581 | 109 | 166 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.04E-16 | 112 | 167 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.3E-17 | 114 | 164 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.2E-10 | 114 | 164 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.00E-10 | 117 | 162 | No hit | No description |
Pfam | PF00249 | 2.4E-11 | 117 | 161 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-10 | 117 | 160 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MPAVESSSSV WSREQDKQFE KAIAAYPENS SDRWEKIAAD VCGKSVEEIK HHYQLLVDDV 60 SRIESGFVEV PSYNSSSDGS NGLAADDGAS KKGGSFGHLN GDAKASRSDQ ERRKGIAWTE 120 DEHRLFLLGL DKYGKGDWRS ISRNFVVTRT PTQVASHAQK YFIRLNSMNK DRRRSSIHDI 180 TSVANGDVSV PQGPITGQTN GGPPAKPNKQ VVGSAAQGVT MYGAPTMGQP LGVVSAVGTP 240 VSLPPPPHMA YGVGTPVPMV PGAPMNMAPM AYHASVHR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 5e-15 | 1 | 76 | 1 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00500 | DAP | Transfer from AT5G08520 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK356219 | 2e-31 | AK356219.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1031L05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011070471.1 | 1e-157 | transcription factor SRM1 | ||||
Refseq | XP_011070472.1 | 1e-157 | transcription factor SRM1 | ||||
Refseq | XP_020547442.1 | 1e-157 | transcription factor SRM1 | ||||
Refseq | XP_020547443.1 | 1e-157 | transcription factor SRM1 | ||||
Swissprot | Q9FNN6 | 1e-118 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A4D9BQ43 | 1e-173 | A0A4D9BQ43_SALSN; Uncharacterized protein | ||||
STRING | XP_006484484.1 | 1e-139 | (Citrus sinensis) | ||||
STRING | XP_006437648.1 | 1e-139 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4149 | 24 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 1e-120 | MYB family protein |
Publications ? help Back to Top | |||
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