PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00004488-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bZIP
Protein Properties Length: 469aa    MW: 50497 Da    PI: 5.4963
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00004488-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.15.1e-10203239339
                            XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                 bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 
                            ++k  rr+++NReAAr+sR+RKka++++Le+   +L+
  SMil_00004488-RA_Salv 203 RSKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLT 239
                            57899*************************8544444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.2E-8201249No hitNo description
SMARTSM003380.0019201254IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.737203247IPR004827Basic-leucine zipper domain
PfamPF001701.8E-7204240IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.19E-7205246No hitNo description
CDDcd147083.04E-21205257No hitNo description
PROSITE patternPS000360208223IPR004827Basic-leucine zipper domain
PfamPF141441.5E-29288362IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MARATVNIGG DANRRASSGM PSFISQAPLS NTICSLLNHR VLAVESSALV VGVFTSMNLL  60
QIKGKEANAA QTSVRPDLGG LEQYIGFRVG DASNASHVFN PVLNSQTMSP DPRNQSGAFD  120
MSSASTNANF SRDFRSGAGQ VQKGLQQNLV SATGAQDENW RESNMADSSS HTETSTDMDP  180
DDKNYKFEIG QSTAVGASDS GDRSKTLRRL AQNREAARKS RLRKKAYVQQ LENSRLKLTQ  240
LEQEVQQARQ QGVIVSSNGD QSNAGTGNGA LAFDMEYTRW VEEQNRRINE LRAAVNSHVS  300
DAELVTIVEN TATHFNEIFT LKGNAAKAEV FHILSGMWKT PAERCFLWIG GFRPSELLKI  360
LVSQLEPLTE QQLTGICNLQ QSSNQAEDAL SQGMEALQQS LAETLASGSS ANVANYMGQM  420
AMAMGKLGTL EGGQLKTTNS TTDASHADDA TIGSCSSVDT RLLLEASSP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ1399910.0KJ139991.1 Salvia miltiorrhiza f. alba transcription factor TGA2 (TGA2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079069.10.0transcription factor TGA2.2
SwissprotO241601e-166TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLX2JIW30.0X2JIW3_SALMI; Transcription factor TGA2
STRINGMigut.J01654.1.p1e-175(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8202385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-118TGACG motif-binding factor 6