PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00004434-RA_Salv | ||||||||
Common Name | MYB75 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MYB | ||||||||
Protein Properties | Length: 229aa MW: 26694.5 Da PI: 6.3984 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36.6 | 1e-11 | 18 | 65 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd +l + G +W+ +++ g+ R++k+c++rw +yl SMil_00004434-RA_Salv 18 RGPWTIEEDHKLMIFILNNGIQCWRMVPKLAGLLRCGKSCRLRWINYL 65 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 53.6 | 5.2e-17 | 71 | 114 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++++ E+ ++++++++lG++ W++Ia++++ gRt++++k++w++ SMil_00004434-RA_Salv 71 RGAFSEIEENQIIELHARLGNR-WSKIASHFP-GRTDNEIKNHWNT 114 899*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-20 | 9 | 68 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.467 | 13 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.24E-28 | 15 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.4E-4 | 17 | 67 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-9 | 18 | 65 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00627 | 20 | 65 | No hit | No description |
PROSITE profile | PS51294 | 26.051 | 66 | 120 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-25 | 69 | 120 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.3E-17 | 70 | 118 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.5E-16 | 71 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.28E-11 | 73 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
LVTKMGRQPC CDKIGLKRGP WTIEEDHKLM IFILNNGIQC WRMVPKLAGL LRCGKSCRLR 60 WINYLRPDLK RGAFSEIEEN QIIELHARLG NRWSKIASHF PGRTDNEIKN HWNTKIKKKL 120 RLLGINPVTH QPVDKKQEIV EQNEQEKVDG LEESKGDDRN DVVESCQSET SSDHLMNNYE 180 IMSTITNMDM DTFSLQASFK LMDYSTHVEE WVEGVDSMIF WDGIDQQLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-28 | 16 | 120 | 5 | 108 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 114 | 120 | KIKKKLR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00510 | DAP | Transfer from AT5G14340 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF059429 | 0.0 | KF059429.1 Salvia miltiorrhiza MYB-related transcription factor (MYB75) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020554906.1 | 2e-98 | myb-related protein 315-like | ||||
Swissprot | P81394 | 2e-81 | MYB15_ANTMA; Myb-related protein 315 | ||||
TrEMBL | A0A059PRV0 | 1e-167 | A0A059PRV0_SALMI; MYB-related transcription factor | ||||
STRING | VIT_14s0219g00050.t01 | 1e-93 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14340.1 | 2e-82 | myb domain protein 40 |
Publications ? help Back to Top | |||
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