PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00004381-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HD-ZIP
Protein Properties Length: 733aa    MW: 80303.7 Da    PI: 5.6285
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00004381-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.99.9e-2065120156
                            TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            +++ +++t++q++e+e++F+++++p+ ++r+eL ++lgL+  qVk+WFqN+R+++k
  SMil_00004381-RA_Salv  65 KKRYHRHTQHQIQEMESFFNECPHPDDKQRKELGRRLGLEPLQVKFWFQNKRTQMK 120
                            688999***********************************************998 PP
2START215.81.5e-672544741206
                            HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.. CS
                  START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.. 77 
                            ela +a++el+++a+ +ep+W  s     e++ ++e+ ++f+++ +      ++ea+r+s+vv+m++ +lve+l+d++ qW+  +a  
  SMil_00004381-RA_Salv 254 ELAVAAMEELIRMAQTGEPLWIPSTenaaEILSEEEYGRTFPRGIGpkplgLKSEASRESAVVIMNHINLVEILMDVN-QWSSVFAsi 340
                            57899*******************9999999**********99999********************************.********* PP

                            ..EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEE CS
                  START  78 ..kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliep 156
                              +  tlev+s+g      galq+m+ae+q++splvp R+ +fvRy++q+++g+w++vdvS+d+ ++ +    + R++++pSg+li++
  SMil_00004381-RA_Salv 341 vsRSVTLEVLSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHTDGTWAVVDVSLDNLRPTS----ISRCRRRPSGCLIQE 424
                            *99***************************************************************976....8************** PP

                            ECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                  START 157 ksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                            ++ng+skvtwvehv++++r +h+++++lv+sgla+gak+wvatl+rqce+
  SMil_00004381-RA_Salv 425 LPNGYSKVTWVEHVEVDDRAVHSIYKPLVNSGLAFGAKRWVATLDRQCER 474
                            ************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.8E-1949122IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-2150120IPR009057Homeodomain-like
PROSITE profilePS5007116.48762122IPR001356Homeobox domain
SMARTSM003892.1E-1863126IPR001356Homeobox domain
CDDcd000865.20E-1865123No hitNo description
PfamPF000462.0E-1765120IPR001356Homeobox domain
SuperFamilySSF559612.49E-37245476No hitNo description
PROSITE profilePS5084846.509245477IPR002913START domain
CDDcd088752.99E-131249473No hitNo description
SMARTSM002345.1E-70254474IPR002913START domain
PfamPF018525.9E-56255474IPR002913START domain
Gene3DG3DSA:3.30.530.203.5E-6351474IPR023393START-like domain
SuperFamilySSF559613.51E-27494725No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048825Biological Processcotyledon development
GO:0090627Biological Processplant epidermal cell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
LEEGGSRMFQ PNMFDSHHHL LDMTHKTPEN EMDLIRDDEY ESKSGTDIME APSGDDQDPN  60
QRPKKKRYHR HTQHQIQEME SFFNECPHPD DKQRKELGRR LGLEPLQVKF WFQNKRTQMK  120
AQHERHENTQ LRNENEKLRA ENIRYKEALS NATCPNCGGP AAIGEMSFDE QHLRIENARL  180
REEIDRISGI AAKYVGKPML SYPHLSPGAS RSLDLGVGNF GGQTGGIGGE VFGAADLLRS  240
VSGPTDADKP VIIELAVAAM EELIRMAQTG EPLWIPSTEN AAEILSEEEY GRTFPRGIGP  300
KPLGLKSEAS RESAVVIMNH INLVEILMDV NQWSSVFASI VSRSVTLEVL STGVAGNYNG  360
ALQVMTAEFQ VPSPLVPTRE NYFVRYCKQH TDGTWAVVDV SLDNLRPTSI SRCRRRPSGC  420
LIQELPNGYS KVTWVEHVEV DDRAVHSIYK PLVNSGLAFG AKRWVATLDR QCERLASVMA  480
NNISAGDVGV ISSPEGRKSM LKLAERMVMS FCTGVGASTA HTWTTLSGSG ADDVRVMTRK  540
SMDDPGRPPG IVLSAATSFW LPVPPKRVFD FLRDENSRSE WDILSNGGLV QEMAHIANGR  600
DPGNSVSLLR VNSANSSQSN MLILQESSTD ATGSYVIYAP VDIHAMNVVL SGGDPDYVAL  660
LPSGFAILPD GPNNEEGGIP EVGSGGSLLT VAFQILVDSV PTAKLSLGSV ATVNSLIKCT  720
VERIKGAVLC DTA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096101.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_011096102.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_011096103.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_020554106.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_020554107.10.0homeobox-leucine zipper protein MERISTEM L1
SwissprotQ8RWU40.0ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1
TrEMBLA0A2G9GCJ20.0A0A2G9GCJ2_9LAMI; Uncharacterized protein
STRINGMigut.M01293.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9322491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Takada S,Takada N,Yoshida A
    Induction of epidermal cell fate in Arabidopsis shoots.
    Plant Signal Behav, 2013. 8(11): p. e26236
    [PMID:23989220]
  3. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  4. Katagiri Y, et al.
    The coordination of ploidy and cell size differs between cell layers in leaves.
    Development, 2016. 143(7): p. 1120-5
    [PMID:26903507]
  5. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  6. Schwarz EM,Roeder AH
    Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals.
    Front Plant Sci, 2016. 7: p. 1744
    [PMID:27920789]
  7. Meyer HM, et al.
    Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepal.
    Elife, 2018.
    [PMID:28145865]