PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00004343-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family YABBY
Protein Properties Length: 136aa    MW: 15202.3 Da    PI: 8.828
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00004343-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY78.91.6e-24258258
                  YABBY  2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqlla 58
                           +v+ +s+ vCyvqCnfCntilav+vP + +++vvtvrCGhC++llsvn+   ++ + 
  SMil_00004343-RA_Salv  2 SVDMNSGGVCYVQCNFCNTILAVNVPGSNMLNVVTVRCGHCANLLSVNMGGLHHSVY 58
                           67889999*****************************************99988765 PP
2YABBY87.63.2e-2771112118159
                  YABBY 118 PPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159
                             PekrqrvPsaynrfikeeiqrikasnP+i+hreafs aakn
  SMil_00004343-RA_Salv  71 APEKRQRVPSAYNRFIKEEIQRIKASNPEITHREAFSSAAKN 112
                            6****************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046906.3E-23859IPR006780YABBY protein
PfamPF046901.2E-2569112IPR006780YABBY protein
SuperFamilySSF470951.82E-571109IPR009071High mobility group box domain
CDDcd000841.75E-477104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MSVDMNSGGV CYVQCNFCNT ILAVNVPGSN MLNVVTVRCG HCANLLSVNM GGLHHSVYLQ  60
DFQFSLISTL APEKRQRVPS AYNRFIKEEI QRIKASNPEI THREAFSSAA KNVMGTSSSY  120
SFWTQQNKLR YEACRS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT3727842e-57KT372784.1 Mentha spicata YABBY family protein 4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088989.15e-50putative axial regulator YABBY 2 isoform X1
RefseqXP_011088990.15e-50putative axial regulator YABBY 2 isoform X1
RefseqXP_020552308.14e-50putative axial regulator YABBY 2 isoform X2
SwissprotQ10FZ75e-41YAB2_ORYSJ; Protein YABBY 2
TrEMBLA0A4D8ZMB04e-56A0A4D8ZMB0_SALSN; Uncharacterized protein
STRINGXP_010263069.12e-48(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38124163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.23e-43YABBY family protein