PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00004324-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 354aa    MW: 39488.8 Da    PI: 6.5805
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00004324-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.89.3e-12556147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                           +++WT eE+e l  +v+++G g Wk I r          R+  ++k++w+++
  SMil_00004324-RA_Salv  5 KQKWTSEEEEALRAGVAKHGAGKWKNIQRDPEfnhllFSRSNIDLKDKWRNL 56
                           79*******************************9*9989***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.138161IPR017930Myb domain
SuperFamilySSF466892.08E-15258IPR009057Homeodomain-like
SMARTSM007178.9E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-13456IPR009057Homeodomain-like
PfamPF002492.7E-8556IPR001005SANT/Myb domain
CDDcd116604.18E-21656No hitNo description
SuperFamilySSF467853.32E-5118154IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150417.302118245IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.103.5E-6118149IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MGNPKQKWTS EEEEALRAGV AKHGAGKWKN IQRDPEFNHL LFSRSNIDLK DKWRNLSVAN  60
GQGPRDKSKT PKTKASPAES PATPLPAAQT SAIVPYSQDK SADVVMLDSS KPLPEGNSAA  120
KYNAMIFEAL STLKEPNGSD SGAIATYIEL EMYFLRISEW ELKFSPQDVV GINSSLMLDL  180
QVEVSERIMS PIISQEVEQL RIAVTSVSQR QEVPQNFKRA LSSRLRRLVQ QDKLEKVQNC  240
YRIKNKAQLD TRIPITRPKE LQPPRQVQSI GYLGNTVEEA AVSAAYKIAE AENKSFVAAE  300
AVKEAERVST MAEDMESLLQ FASDCFDQSI SSKLYFLLIS FQDNYNANIS VLVV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078025.11e-140telomere repeat-binding factor 4
TrEMBLA0A2G9HZM41e-139A0A2G9HZM4_9LAMI; Uncharacterized protein
STRINGMigut.L01522.1.p1e-121(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25042355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.18e-43MYB_related family protein