PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00004253-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 74aa    MW: 8778.74 Da    PI: 8.8713
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00004253-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.24.3e-09650345
                           SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                           +WT    +++ da +++ ++   +W+ Iar +  g+++ +++ ++q
  SMil_00004253-RA_Salv  6 SWTLKQNKQFEDALAKYYKDtpdRWHNIARAVT-GKSPDDVRRHYQ 50
                           7*******************************9.***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.017153IPR017877Myb-like domain
SMARTSM007172.2E-7355IPR001005SANT/Myb domain
SuperFamilySSF466893.81E-13561IPR009057Homeodomain-like
CDDcd001675.94E-6652No hitNo description
Gene3DG3DSA:1.10.10.602.2E-5656IPR009057Homeodomain-like
PfamPF002491.3E-6651IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    Send to blast
MASSSSWTLK QNKQFEDALA KYYKDTPDRW HNIARAVTGK SPDDVRRHYQ ALEKDIIKIE  60
NDQVPIPNYN DHRY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-23269673RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074553.19e-33protein RADIALIS-like 3
SwissprotQ1A1732e-25RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A4D9C1352e-41A0A4D9C135_SALSN; Uncharacterized protein
STRINGMigut.N00487.1.p1e-30(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.27e-28RAD-like 6