PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00004137-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 73aa    MW: 8112.05 Da    PI: 5.83
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00004137-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.37.5e-13554247
                           SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47
                             WT+eE +++ +av+ + ++     W  Ia+ +g g+t +++k ++qk+
  SMil_00004137-RA_Salv  5 TTWTAEENKRFENAVAAYDKEtspgKWQNIAAAVGGGKTVEDIKCHYQKL 54
                           68*****************99***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.829155IPR017877Myb-like domain
SMARTSM007172.2E-8357IPR001005SANT/Myb domain
PfamPF002496.4E-10454IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-7455IPR009057Homeodomain-like
SuperFamilySSF466898.61E-12562IPR009057Homeodomain-like
CDDcd001671.74E-6655No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    Send to blast
MGSKTTWTAE ENKRFENAVA AYDKETSPGK WQNIAAAVGG GKTVEDIKCH YQKLVEDIRQ  60
IEAGNVPLPN YKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-21272674RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083676.11e-29protein RADIALIS-like 4
RefseqXP_022869684.11e-29protein RADIALIS-like 3
RefseqXP_022894565.11e-29protein RADIALIS-like 3
SwissprotQ1A1738e-23RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2G9FYT44e-29A0A2G9FYT4_9LAMI; Uncharacterized protein
STRINGXP_009791349.13e-28(Nicotiana sylvestris)
STRINGXP_009586717.13e-28(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.12e-25RAD-like 6