PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00004080-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

GRAS

Protein Properties

Length: 441aa MW: 49830.6 Da PI: 9.3966

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00004080-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	231.9	3e-71	112	346	1	237
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 l++lL++cA+av+++d + a++lL++++++asp+g+ +qRla+yf+ +L+ar+a+++s++ ka+ ++ts ++ l+a+ ++ s SMil_00004080-RA_Salv 112 LRTLLINCAQAVAADDRRSASELLKQIRQHASPYGEGNQRLAHYFADGLEARMAGTGSQIHKAFVNKKTS---AADYLKAYYTYLASS 196 6789**********************************************************999999...9********** PP GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgv 174 P+ k+s++t N++I+ ++ rvH+iDf+i +G+QWp+L+q +a+R++gpp+lRiTg++ p++g +e++eetg+rLa++A++++v SMil_00004080-RA_Salv 197 PFKKISNFTSNKTIMFTSIKAARVHVIDFGILYGFQWPTLIQRIAERDGGPPMLRITGIDFPQPGfrPAEKIEETGRRLARYAKQFKV 284 ************************************************************9******************* PP GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPk 237 pfe+n+ +ak++e++++e+L++++gE l+Vn++++ ++llde+v es r+ vL+l+++ +P+ SMil_00004080-RA_Salv 285 PFEYNA-IAKKWENIKIEDLKIEKGEFLIVNSMYRAKNLLDETVLAESSRTMVLNLIRKGQPE 346 **.7************************************************98885 PP
2	GRAS	28.5	1.9e-09	344	382	279	317
GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWre 317 + er+ +Er ++g e+ nv+aceg er+er et+++W++ SMil_00004080-RA_Salv 344 QPERMLIERDIFGSEALNVIACEGWERVERPETYKQWQS 382 579**********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	45.003	86	441	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.0E-68	112	346	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MKLAVEEYCG EQLPSGSRGK KSRSTVDVDL EEERSSKLPA VYAESDSDVP VDEFDDVLLS 60 TMGDRGEKFA AYREVLQNAS SKGSQQNGQT KRASGGRGRA KKQNKKKEVI DLRTLLINCA 120 QAVAADDRRS ASELLKQIRQ HASPYGEGNQ RLAHYFADGL EARMAGTGSQ IHKAFVNKKT 180 SAADYLKAYY TYLASSPFKK ISNFTSNKTI MFTSIKAARV HVIDFGILYG FQWPTLIQRI 240 AERDGGPPML RITGIDFPQP GFRPAEKIEE TGRRLARYAK QFKVPFEYNA IAKKWENIKI 300 EDLKIEKGEF LIVNSMYRAK NLLDETVLAE SSRTMVLNLI RKGQPERMLI ERDIFGSEAL 360 NVIACEGWER VERPETYKQW QSVDVDGVER PDNLRHIVLE ARLRERSFCS LVPTSNIIRL 420 LQAHKTNRGV GFDEFGSSID E

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MKLAVEEYCG EQLPSGSRGK KSRSTVDVDL EEERSSKLPA VYAESDSDVP VDEFDDVLLS  60
TMGDRGEKFA AYREVLQNAS SKGSQQNGQT KRASGGRGRA KKQNKKKEVI DLRTLLINCA  120
QAVAADDRRS ASELLKQIRQ HASPYGEGNQ RLAHYFADGL EARMAGTGSQ IHKAFVNKKT  180
SAADYLKAYY TYLASSPFKK ISNFTSNKTI MFTSIKAARV HVIDFGILYG FQWPTLIQRI  240
AERDGGPPML RITGIDFPQP GFRPAEKIEE TGRRLARYAK QFKVPFEYNA IAKKWENIKI  300
EDLKIEKGEF LIVNSMYRAK NLLDETVLAE SSRTMVLNLI RKGQPERMLI ERDIFGSEAL  360
NVIACEGWER VERPETYKQW QSVDVDGVER PDNLRHIVLE ARLRERSFCS LVPTSNIIRL  420
LQAHKTNRGV GFDEFGSSID E

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	6e-36	101	354	8	253	Protein SCARECROW
5b3h_A	5e-36	95	354	1	252	Protein SCARECROW
5b3h_D	5e-36	95	354	1	252	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011077642.1	0.0	scarecrow-like protein 9
Swissprot	O80933	1e-131	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A4D9AX60	0.0	A0A4D9AX60_SALSN; Uncharacterized protein
STRING	Migut.L01952.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-133	GRAS family protein